STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06407.1PFAM: Domain of unknown function DUF128; Ribonuclease R winged-helix domain; COGs: COG1693 conserved hypothetical protein; InterPro IPR013668:IPR002846; KEGG: mpl:Mpal_0291 ribonuclease R winged-helix domain protein; PFAM: Protein of unknown function DUF128; Ribonuclease R winged-helix domain; SPTR: Ribonuclease R winged-helix domain protein. (318 aa)    
Predicted Functional Partners:
EJG06406.1
PFAM: dUTPase; TIGRFAM: deoxycytidine triphosphate deaminase; COGs: COG0717 Deoxycytidine deaminase; InterPro IPR011962:IPR008180; KEGG: mpl:Mpal_0292 deoxycytidine triphosphate deaminase; PFAM: DeoxyUTP pyrophosphatase domain; SPTR: Deoxycytidine triphosphate deaminase; TIGRFAM: Deoxycytidine triphosphate deaminase.
       0.852
EJG06881.1
UPF0235 protein yggU; PFAM: Uncharacterised ACR, YggU family COG1872; TIGRFAM: TIGR00251 family protein; COGs: COG1872 conserved hypothetical protein; HAMAP: Protein of unknown function DUF167; InterPro IPR003746:IPR005228; KEGG: mem:Memar_1018 hypothetical protein; PFAM: Protein of unknown function DUF167; SPTR: UPF0235 protein Memar_1018; TIGRFAM: Conserved hypothetical protein CHP00251; Belongs to the UPF0235 family.
  
     0.533
EJG07190.1
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.
  
     0.531
EJG08116.1
PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I; COGs: COG0174 Glutamine synthetase; InterPro IPR008147:IPR008146:IPR004809; KEGG: mem:Memar_0335 glutamine synthetase, type I; PFAM: Glutamine synthetase, catalytic region; Glutamine synthetase, beta-Grasp; SPTR: L-glutamine synthetase; TIGRFAM: Glutamine synthetase type I.
     
 0.519
EJG06405.1
PFAM: von Willebrand factor type A domain; Bacterial Ig-like domain (group 1); InterPro IPR003344:IPR002035; KEGG: mem:Memar_0553 von Willebrand factor, type A; PFAM: von Willebrand factor, type A; Bacterial Ig-like, group 1; SMART: von Willebrand factor, type A; Bacterial Ig-like, group 1; SPTR: von Willebrand factor, type A.
 
     0.517
EJG07239.1
PFAM: Uncharacterized protein conserved in archaea (DUF2111); COGs: COG4048 conserved hypothetical protein; InterPro IPR012029; KEGG: mem:Memar_1649 hypothetical protein; PFAM: Uncharacterised conserved protein UCP006557, signal transduction; SPTR: Putative uncharacterized protein.
  
     0.499
EJG07196.1
PFAM: Bacterial type II secretion system protein F domain; COGs: COG1955 flagella assembly protein J; InterPro IPR018076; KEGG: mem:Memar_0948 flagellar assembly protein J; PFAM: Type II secretion system F domain; SPTR: Type II secretion system protein.
  
     0.489
mtrD
Tetrahydromethanopterin S-methyltransferase subunit D; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.
  
     0.473
EJG08294.1
COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; KEGG: mpi:Mpet_0149 oxygen-sensitive ribonucleoside-triphosphate reductase-like protein; SPTR: Oxygen-sensitive ribonucleoside-triphosphate reductase-like protein.
  
     0.471
EJG06215.1
PFAM: Uncharacterized protein conserved in archaea (DUF2124); COGs: COG4090 conserved hypothetical protein; InterPro IPR009183; KEGG: mem:Memar_2183 hypothetical protein; PFAM: Uncharacterised conserved protein UCP004962; SPTR: Putative uncharacterized protein.
 
     0.462
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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