Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EJG06445.1PFAM: Pyridoxamine 5'-phosphate oxidase; NADPH-dependent FMN reductase; InterPro IPR011576; KEGG: mth:MTH1484 hypothetical protein; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SPTR: Putative uncharacterized protein. (312 aa)    
Predicted Functional Partners:
EJG07018.1
GAF domain protein; InterPro IPR003018; KEGG: mpi:Mpet_0436 putative GAF sensor protein; PFAM: GAF; SMART: GAF; SPTR: Putative GAF sensor protein.
  
     0.654
EJG06446.1
Protein of unknown function DUF2207, membrane; PFAM: Predicted membrane protein (DUF2207); COGs: COG4907 membrane protein; InterPro IPR018702; KEGG: mem:Memar_2464 hypothetical protein; PFAM: Protein of unknown function DUF2207, membrane; SPTR: Putative uncharacterized protein.
       0.512
EJG06447.1
PFAM: LemA family; COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: mpl:Mpal_0788 LemA family protein; PFAM: LemA; SPTR: LemA family protein.
       0.512
EJG06448.1
PFAM: Domain of unknown function (DUF362); COGs: COG2006 conserved hypothetical protein; InterPro IPR007160:IPR001450; KEGG: mpl:Mpal_1943 protein of unknown function DUF362; PFAM: Protein of unknown function DUF362; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: Putative uncharacterized protein.
 
     0.492
EJG06510.1
PFAM: Bacterial regulatory protein, arsR family; V4R domain; COGs: COG1719 hydrocarbon binding protein (contains V4R domain); InterPro IPR001845:IPR004096; KEGG: mem:Memar_0431 4-vinyl reductase, 4VR; PFAM: 4-vinyl reductase, 4VR; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family.
  
     0.466
EJG06165.1
PFAM: UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: mel:Metbo_1561 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: UvrD/REP helicase family protein.
  
     0.453
EJG07111.1
PFAM: Bacterial Ig-like domain (group 2); InterPro IPR003343; KEGG: mpl:Mpal_1812 PKD domain containing protein; PFAM: Bacterial Ig-like, group 2; SMART: Bacterial Ig-like, group 2; SPTR: PKD domain containing protein.
  
     0.400
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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