STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06490.1KEGG: mbn:Mboo_0601 hypothetical protein; SPTR: Putative uncharacterized protein. (272 aa)    
Predicted Functional Partners:
EJG06484.1
Methanogenesis marker protein 11; PFAM: Domain of unknown function (DUF1743); TIGRFAM: putative methanogenesis marker protein 11; COGs: COG1571 DNA-binding protein containing a Zn-ribbon domain; InterPro IPR017674:IPR013696; KEGG: mem:Memar_0630 hypothetical protein; PFAM: Domain of unknown function DUF1743; SPTR: tRNA(Ile2) 2-agmatinylcytidine synthetase; TIGRFAM: Putative methanogenesis marker protein 11.
 
     0.972
EJG06486.1
PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; COGs: COG4231 Indolepyruvate ferredoxin oxidoreductase alpha and beta subunits; KEGG: mem:Memar_0632 indolepyruvate ferredoxin oxidoreductase alpha and beta subunits-like protein; SPTR: Indolepyruvate ferredoxin oxidoreductase alpha and beta subunits-like protein.
 
     0.954
EJG06487.1
Pyruvate carboxyltransferase; PFAM: HMGL-like; COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891; KEGG: mem:Memar_0633 trans-homoaconitate synthase; PFAM: Pyruvate carboxyltransferase; SPTR: 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.941
leuC
3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
       0.941
EJG06485.1
PFAM: Radical SAM superfamily; COGs: COG2516 Biotin synthase-related protein; InterPro IPR007197:IPR006638; KEGG: mbn:Mboo_0596 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein.
 
     0.937
EJG06491.1
PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isopropylmalate/isohomocitrate dehydrogenases; COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; InterPro IPR001804; KEGG: mem:Memar_0637 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; SPTR: 3-isopropylmalate dehydrogenase.
       0.936
EJG06489.1
PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; COGs: COG0066 3-isopropylmalate dehydratase small subunit; InterPro IPR011827:IPR000573; KEGG: mem:Memar_0635 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; SPTR: 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit, subgroup.
       0.934
EJG06483.1
Hypothetical protein; PFAM: Domain of unknown function (DUF1743); TIGRFAM: putative methanogenesis marker protein 11; COGs: COG1571 DNA-binding protein containing a Zn-ribbon domain; KEGG: mem:Memar_0629 hypothetical protein; SPTR: tRNA(Ile2) 2-agmatinylcytidine synthetase.
 
     0.847
EJG07526.1
Hypothetical protein; PFAM: CARDB; KEGG: mem:Memar_1820 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.708
EJG06974.1
PFAM: Major Facilitator Superfamily; InterPro IPR011701; KEGG: mpi:Mpet_1231 major facilitator superfamily protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1.
  
     0.697
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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