STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06524.1PFAM: Radical SAM superfamily; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197:IPR006638; KEGG: mem:Memar_0654 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein. (301 aa)    
Predicted Functional Partners:
EJG06498.1
PFAM: Nitrogenase component 1 type Oxidoreductase; COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000510; KEGG: mpl:Mpal_0555 nitrogenase; PFAM: Nitrogenase/oxidoreductase, component 1; SPTR: Nitrogenase; Belongs to the NifD/NifK/NifE/NifN family.
  
 0.971
EJG06500.1
PFAM: Nitrogenase component 1 type Oxidoreductase; COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000510; KEGG: mpi:Mpet_0259 nitrogenase molybdenum-iron protein beta chain; PFAM: Nitrogenase/oxidoreductase, component 1; SPTR: Nitrogenase molybdenum-iron protein beta chain; Belongs to the NifD/NifK/NifE/NifN family.
  
 0.922
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
 
  
 0.808
EJG06501.1
Nitrogenase molybdenum-iron protein alpha chain; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase component I, alpha chain; nitrogenase molybdenum-iron protein alpha chain; COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR005972:IPR010143:IPR000510; KEGG: mpi:Mpet_0260 nitrogenase molybdenum-iron protein alpha chain; PFAM: Nitrogenase/oxidoreductase, component 1; SPTR: Nitrogenase protein alpha chain; TIGRFAM: Nitrogenase molybdenum-iron protein alpha chain; Nitrogenase component 1, alpha chain.
 
  
 0.790
EJG07797.1
PFAM: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; TIGRFAM: nitrogenase iron protein; COGs: COG1348 Nitrogenase subunit NifH (ATPase); InterPro IPR000392; KEGG: mem:Memar_1937 nitrogenase; PFAM: Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL; SPTR: Nitrogenase iron protein; Belongs to the NifH/BchL/ChlL family.
 
  
 0.762
EJG06499.1
Nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifE; COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR005973:IPR000510; KEGG: mpl:Mpal_0556 nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: Nitrogenase/oxidoreductase, component 1; SPTR: Nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: Nitrogenase MoFe cofactor biosynthesis protein NifE; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.751
EJG06523.1
PFAM: 8-oxoguanine DNA glycosylase, N-terminal domain; HhH-GPD superfamily base excision DNA repair protein; TIGRFAM: 8-oxoguanine DNA-glycosylase (ogg); COGs: COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; InterPro IPR012904:IPR003265; KEGG: mbn:Mboo_0662 8-oxoguanine DNA glycosylase domain-containing protein; PFAM: 8-oxoguanine DNA glycosylase, N-terminal; HhH-GPD domain; SMART: HhH-GPD domain; SPTR: 8-oxoguanine DNA glycosylase domain protein.
       0.738
EJG07796.1
PFAM: Nitrogenase component 1 type Oxidoreductase; COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000510; KEGG: mbn:Mboo_2082 oxidoreductase/nitrogenase, component 1; PFAM: Nitrogenase/oxidoreductase, component 1; SPTR: Oxidoreductase/nitrogenase, component 1; overlaps another CDS with the same product name.
 
  
 0.734
EJG07795.1
PFAM: Nitrogenase component 1 type Oxidoreductase; COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000510; KEGG: mbn:Mboo_2081 oxidoreductase/nitrogenase, component 1; PFAM: Nitrogenase/oxidoreductase, component 1; SPTR: Oxidoreductase/nitrogenase, component 1; overlaps another CDS with the same product name.
 
  
 0.652
EJG07316.1
PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstC; phosphate ABC transporter, permease protein PstA; COGs: COG0573 ABC-type phosphate transport system permease component; InterPro IPR011864:IPR005672:IPR000515; KEGG: mpi:Mpet_1485 phosphate ABC transporter inner membrane subunit PstC; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: Phosphate ABC transporter, permease protein PstC; Phosphate transport system [...]
  
  
 0.598
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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