STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06538.1KEGG: mem:Memar_1889 hypothetical protein; SPTR: Putative uncharacterized protein. (76 aa)    
Predicted Functional Partners:
EJG06539.1
PFAM: Amino acid kinase family; COGs: COG0528 Uridylate kinase; InterPro IPR001048; KEGG: mem:Memar_1890 aspartate/glutamate/uridylate kinase; PFAM: Aspartate/glutamate/uridylate kinase; SPTR: Aspartate/glutamate/uridylate kinase.
 
     0.866
EJG07790.1
KEGG: mla:Mlab_0256 periplasmic binding protein; SPTR: Putative uncharacterized protein.
 
     0.735
EJG06537.1
PFAM: Amino acid kinase family; COGs: COG0528 Uridylate kinase; InterPro IPR001048; KEGG: mem:Memar_1890 aspartate/glutamate/uridylate kinase; PFAM: Aspartate/glutamate/uridylate kinase; SPTR: Aspartate/glutamate/uridylate kinase; manually curated.
 
     0.732
EJG07292.1
PFAM: Rubrerythrin; COGs: COG1633 conserved hypothetical protein; InterPro IPR003251; KEGG: mhu:Mhun_1807 rubrerythrin; PFAM: Rubrerythrin; SPTR: Rubrerythrin.
  
     0.680
EJG07781.1
PFAM: PEGA domain; Protein of unknown function (DUF3344); InterPro IPR013229; KEGG: mpi:Mpet_0024 PEGA domain-containing protein; PFAM: PEGA; SPTR: PEGA domain protein.
  
     0.500
EJG06978.1
PFAM: S-adenosylmethionine decarboxylase; InterPro IPR003826; KEGG: mem:Memar_2178 hypothetical protein; PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal; SPTR: Putative uncharacterized protein.
  
     0.490
EJG07575.1
KEGG: mem:Memar_0684 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.480
EJG08238.1
KEGG: mem:Memar_0684 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.470
EJG07577.1
PFAM: Protein of unknown function DUF58; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: mem:Memar_2402 hypothetical protein; PFAM: Protein of unknown function DUF58; SPTR: Putative uncharacterized protein.
  
     0.469
EJG08182.1
PAS sensor protein; PFAM: PAS fold; TIGRFAM: PAS domain S-box; InterPro IPR000014:IPR013656; KEGG: mem:Memar_2475 putative PAS/PAC sensor protein; PFAM: PAS fold-4; SMART: PAS; SPTR: Putative PAS/PAC sensor protein; TIGRFAM: PAS.
  
     0.465
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.