STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06610.1Di-trans-poly-cis-decaprenylcistransferase; PFAM: Putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; COGs: COG0020 Undecaprenyl pyrophosphate synthase; InterPro IPR001441; KEGG: mem:Memar_1787 di-trans-poly-cis-decaprenylcistransferase; PFAM:Di-trans-poly-cis-decaprenylcistransferase-lik e; SPTR: Di-trans-poly-cis-decaprenylcistransferase. (196 aa)    
Predicted Functional Partners:
EJG06578.1
PFAM: Polyprenyl synthetase; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: mem:Memar_1816 geranyltranstransferase; PFAM: Polyprenyl synthetase; SPTR: Geranylgeranyl-diphosphate synthase / farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.994
uppS
Undecaprenyl pyrophosphate synthase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.
  
  
 0.856
EJG07903.1
PFAM: Peptidase family M50; InterPro IPR008915; KEGG: mbn:Mboo_1942 peptidase M50; PFAM: Peptidase M50; SPTR: Peptidase M50.
  
  
 0.827
EJG06611.1
PFAM: PHP domain; COGs: COG1796 DNA polymerase IV (family X); InterPro IPR002054:IPR003583:IPR003141:IPR004013; KEGG: mpl:Mpal_0112 PHP domain protein; PFAM: PHP, C-terminal; SMART: DNA-directed DNA polymerase, family X; Helix-hairpin-helix DNA-binding motif, class 1; Polymerase/histidinol phosphatase, N-terminal; SPTR: PHP domain protein.
     
 0.792
nusA
NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.
 
    0.725
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
  
    0.695
nusA-2
NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.
  
    0.686
EJG06539.1
PFAM: Amino acid kinase family; COGs: COG0528 Uridylate kinase; InterPro IPR001048; KEGG: mem:Memar_1890 aspartate/glutamate/uridylate kinase; PFAM: Aspartate/glutamate/uridylate kinase; SPTR: Aspartate/glutamate/uridylate kinase.
 
  
 0.641
EJG07934.1
Phosphoesterase PA-phosphatase related protein; PFAM: PAP2 superfamily; InterPro IPR000326; KEGG: atm:ANT_23660 phosphatase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: Phosphatase.
  
 
 0.633
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
 
  
 0.632
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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