Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EJG06610.1Di-trans-poly-cis-decaprenylcistransferase; PFAM: Putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; COGs: COG0020 Undecaprenyl pyrophosphate synthase; InterPro IPR001441; KEGG: mem:Memar_1787 di-trans-poly-cis-decaprenylcistransferase; PFAM:Di-trans-poly-cis-decaprenylcistransferase-lik e; SPTR: Di-trans-poly-cis-decaprenylcistransferase. (196 aa)    
Predicted Functional Partners:
EJG06578.1
PFAM: Polyprenyl synthetase; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: mem:Memar_1816 geranyltranstransferase; PFAM: Polyprenyl synthetase; SPTR: Geranylgeranyl-diphosphate synthase / farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.989
EJG06611.1
PFAM: PHP domain; COGs: COG1796 DNA polymerase IV (family X); InterPro IPR002054:IPR003583:IPR003141:IPR004013; KEGG: mpl:Mpal_0112 PHP domain protein; PFAM: PHP, C-terminal; SMART: DNA-directed DNA polymerase, family X; Helix-hairpin-helix DNA-binding motif, class 1; Polymerase/histidinol phosphatase, N-terminal; SPTR: PHP domain protein.
     
 0.787
EJG06808.1
PFAM: GTPase of unknown function; GTPase of unknown function C-terminal; TGS domain; COGs: COG0012 GTPase probable translation factor; InterPro IPR002917:IPR013646:IPR004095; KEGG: mem:Memar_1577 translation-associated GTPase; PFAM: GTPase of unknown function C-terminal; GTP-binding protein, HSR1-related; TGS; SPTR: Putative uncharacterized protein.
  
    0.774
uppS
Undecaprenyl pyrophosphate synthase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.
  
   
 0.716
EJG06811.1
Protein of unknown function DUF92 transmembrane; PFAM: Integral membrane protein DUF92; TIGRFAM: TIGR00297 family protein; COGs: COG1836 membrane protein; InterPro IPR002794; KEGG: mem:Memar_1573 hypothetical protein; PFAM: Protein of unknown function DUF92, transmembrane; SPTR: Putative uncharacterized protein; TIGRFAM: Protein of unknown function DUF92, transmembrane.
     
 0.685
nusA
NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.
 
    0.683
EJG07903.1
PFAM: Peptidase family M50; InterPro IPR008915; KEGG: mbn:Mboo_1942 peptidase M50; PFAM: Peptidase M50; SPTR: Peptidase M50.
  
  
 0.670
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
  
  
 0.663
nusA-2
NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.
  
    0.638
EJG06612.1
PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367:IPR007167; KEGG: mem:Memar_1785 FeoA family protein; PFAM: Iron dependent repressor; Ferrous iron transporter, FeoA subunit; SMART: Iron dependent repressor; SPTR: FeoA family protein.
 
     0.619
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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