STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06655.1Hypothetical protein. (299 aa)    
Predicted Functional Partners:
EJG06653.1
Hypothetical protein.
       0.773
EJG06654.1
Hypothetical protein.
       0.773
EJG06652.1
TIGRFAM: DNA binding domain, excisionase family; InterPro IPR010093; KEGG: dau:Daud_1829 DNA binding domain-containing protein; TIGRFAM: Excisionase/Xis, DNA-binding.
       0.623
EJG06656.1
PFAM: UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: hwa:HQ1364A DNA helicase II; PFAM: DNA helicase, UvrD/REP type; SPTR: DNA helicase II.
       0.454
EJG06657.1
PFAM: DNA primase catalytic core, N-terminal domain; COGs: COG0358 DNA primase; InterPro IPR013264; KEGG: has:Halsa_0068 DNA primase catalytic core domain; PFAM: DNA primase, catalytic core, N-terminal; SPTR: DNA primase catalytic core domain.
       0.454
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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