STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nacNascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. (114 aa)    
Predicted Functional Partners:
rps3ae
PFAM: Ribosomal S3Ae family; COGs: COG1890 Ribosomal protein S3AE; HAMAP: 30S ribosomal protein S3Ae; InterPro IPR001593; KEGG: mpi:Mpet_2009 30S ribosomal protein S3Ae; PFAM: Ribosomal protein S3Ae; SPTR: Ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 
 0.999
rpl23
Ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.
  
 
 0.995
rpl31e
PFAM: Ribosomal protein L31e; COGs: COG2097 Ribosomal protein L31E; HAMAP: 50S ribosomal protein L31e; InterPro IPR000054; KEGG: mem:Memar_1969 50S ribosomal protein L31e; PFAM: Ribosomal protein L31e; SPTR: 50S ribosomal protein L31e; Belongs to the ribosomal protein L31e family.
  
 
 0.994
rpl18e
PFAM: Ribosomal protein L18e/L15; COGs: COG1727 Ribosomal protein L18E; HAMAP: 50S ribosomal protein L18e; InterPro IPR001196; KEGG: mbn:Mboo_2221 50S ribosomal protein L18e; PFAM: Ribosomal protein L15; SPTR: 50S ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.
  
 
 0.993
rpl30
PFAM: Ribosomal protein L30p/L7e; TIGRFAM: 50S ribosomal protein L30P, archaeal; COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR005997:IPR000517; KEGG: mem:Memar_0585 50S ribosomal protein L30P; PFAM: Ribosomal protein L30p/L7e, conserved region; SPTR: 50S ribosomal protein L30P; TIGRFAM: Ribosomal protein L30, archaeal.
  
   0.990
rpl29
PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; InterPro IPR001854; KEGG: mem:Memar_0571 ribosomal protein L29; PFAM: Ribosomal protein L29; SPTR: LSU ribosomal protein L29P; TIGRFAM: Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
   0.989
rpl18
Ribosomal protein L18P/L5E; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
  
 
 0.989
rpl18a
PFAM: Ribosomal L18ae/LX protein domain; InterPro IPR002768; KEGG: mem:Memar_1967 ribosomal LX protein; PFAM: Ribosomal protein LX; SPTR: LSU ribosomal protein LX.
   
 
 0.988
rpl15e
PFAM: Ribosomal L15; COGs: COG1632 Ribosomal protein L15E; HAMAP: 50S ribosomal protein L15e; InterPro IPR000439; KEGG: mpl:Mpal_2529 50S ribosomal protein L15e; PFAM: Ribosomal protein L15e; SPTR: Ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.
 
   0.986
rpl21e
PFAM: Ribosomal protein L21e; COGs: COG2139 Ribosomal protein L21E; HAMAP: 50S ribosomal protein L21e; InterPro IPR001147; KEGG: mpl:Mpal_0547 50S ribosomal protein L21e; PFAM: Ribosomal protein L21e; SPTR: 50S ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
  
   0.986
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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