STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06694.1KEGG: mem:Memar_1674 hypothetical protein; SPTR: Putative uncharacterized protein. (131 aa)    
Predicted Functional Partners:
rpl30
PFAM: Ribosomal protein L30p/L7e; TIGRFAM: 50S ribosomal protein L30P, archaeal; COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR005997:IPR000517; KEGG: mem:Memar_0585 50S ribosomal protein L30P; PFAM: Ribosomal protein L30p/L7e, conserved region; SPTR: 50S ribosomal protein L30P; TIGRFAM: Ribosomal protein L30, archaeal.
   
 
 0.988
rps8e
PFAM: Ribosomal protein S8e; TIGRFAM: ribosomal protein S8.e; COGs: COG2007 Ribosomal protein S8E; HAMAP: 30S ribosomal protein S8e; InterPro IPR001047; KEGG: mpi:Mpet_2173 30S ribosomal protein S8e; PFAM: Ribosomal protein S8e; SPTR: 30S ribosomal protein S8e; TIGRFAM: Ribosomal protein S8e; manually curated.
   
 
 0.985
EJG07819.1
PFAM: Nucleolar GTP-binding protein 1 (NOG1); TIGRFAM: small GTP-binding protein domain; COGs: COG1084 GTPase; InterPro IPR005225:IPR002917; KEGG: mbn:Mboo_2103 small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; SPTR: Small GTP-binding protein; TIGRFAM: Small GTP-binding protein; manually curated.
   
 
 0.983
rpl10
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
   
 
 0.977
rpl15e
PFAM: Ribosomal L15; COGs: COG1632 Ribosomal protein L15E; HAMAP: 50S ribosomal protein L15e; InterPro IPR000439; KEGG: mpl:Mpal_2529 50S ribosomal protein L15e; PFAM: Ribosomal protein L15e; SPTR: Ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.
   
 
 0.972
rpl7ae
50S ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
   
   0.958
rpl18a
PFAM: Ribosomal L18ae/LX protein domain; InterPro IPR002768; KEGG: mem:Memar_1967 ribosomal LX protein; PFAM: Ribosomal protein LX; SPTR: LSU ribosomal protein LX.
  
   0.958
rlmE
Ribosomal RNA large subunit methyltransferase E; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
   
 
 0.953
EJG06695.1
Protein of unknown function DUF2144; PFAM: Transcription factor Pcc1; InterPro IPR018675; KEGG: mpl:Mpal_2521 hypothetical protein; PFAM: Protein of unknown function DUF2144; SPTR: Putative uncharacterized protein.
  
    0.947
eif6
Translation initiation factor 6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.
   
 
 0.946
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.