STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06712.1KEGG: mem:Memar_2399 hypothetical protein; SPTR: Putative uncharacterized protein. (554 aa)    
Predicted Functional Partners:
EJG06713.1
KEGG: mem:Memar_2398 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.851
EJG06710.1
PFAM: YcfA-like protein; COGs: COG1724 periplasmic or secreted lipoprotein; InterPro IPR012933; KEGG: mta:Moth_0298 YcfA-like; PFAM: YcfA-like; SPTR: YcfA-like protein.
       0.529
EJG06711.1
PFAM: Uncharacterised protein family (UPF0150); COGs: COG1598 conserved hypothetical protein; InterPro IPR005357; KEGG: mar:MAE_09130 hypothetical protein; PFAM: Uncharacterised protein family UPF0150; SPTR: Toxin-antitoxin system, antitoxin component, HicB family.
       0.529
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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