Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EJG06716.1PFAM: Radical SAM superfamily; B12 binding domain; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: mem:Memar_2393 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein. (480 aa)    
Predicted Functional Partners:
EJG06510.1
PFAM: Bacterial regulatory protein, arsR family; V4R domain; COGs: COG1719 hydrocarbon binding protein (contains V4R domain); InterPro IPR001845:IPR004096; KEGG: mem:Memar_0431 4-vinyl reductase, 4VR; PFAM: 4-vinyl reductase, 4VR; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family.
  
 
 0.883
EJG06714.1
PFAM: Glycosyl transferase family 2; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: mem:Memar_2396 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, family 2; overlaps another CDS with the same product name.
 
   
 0.832
EJG06715.1
PFAM: Glycosyl transferase family 2; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: mba:Mbar_A1131 dolichyl-phosphate mannose synthase related protein; PFAM: Glycosyl transferase, family 2; SPTR: Dolichyl-phosphate mannose synthase related protein; overlaps another CDS with the same product name.
 
   
 0.814
EJG06717.1
PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: hut:Huta_2136 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1.
 
   
 0.630
EJG06718.1
Hypothetical protein.
       0.551
EJG06721.1
PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: mem:Memar_0691 glycosyl transferase, group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1.
 
   
 0.509
EJG06671.1
Digeranylgeranylglyceryl phosphate synthase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
 
 
 0.504
EJG06999.1
PFAM: UbiA prenyltransferase family; COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: mpl:Mpal_1338 prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: UbiA prenyltransferase.
 
 
 0.477
EJG08385.1
PFAM: Cupin domain; InterPro IPR013096; KEGG: reu:Reut_B5207 hypothetical protein; PFAM: Cupin 2, conserved barrel; SPTR: Putative uncharacterized protein.
  
     0.454
EJG06720.1
PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: ppd:Ppro_2460 glycosyl transferase, group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1.
     
 0.431
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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