STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06747.1DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase domain; COGs: COG1669 nucleotidyltransferase; InterPro IPR002934; KEGG: srm:SRM_00813 conserved hypothetical protein containing nucleotidyltransferase domain; PFAM: Nucleotidyltransferase; SPTR: Putative uncharacterized protein. (96 aa)    
Predicted Functional Partners:
EJG07612.1
PFAM: Protein of unknown function DUF86; COGs: COG2361 conserved hypothetical protein; InterPro IPR008201; KEGG: mpi:Mpet_0214 hypothetical protein; PFAM: Protein of unknown function DUF86; SPTR: Putative uncharacterized protein.
 
  
 0.506
EJG06744.1
PFAM: Protein of unknown function DUF86; COGs: COG2361 conserved hypothetical protein; InterPro IPR008201; KEGG: srm:SRM_00727 conserved hypothetical protein containing DUF86; PFAM: Protein of unknown function DUF86; SPTR: Putative uncharacterized protein.
 
  
 0.450
EJG06299.1
PFAM: Protein of unknown function DUF86; COGs: COG2361 conserved hypothetical protein; InterPro IPR008201; KEGG: fpl:Ferp_0438 protein of unknown function DUF86; PFAM: Protein of unknown function DUF86; SPTR: Putative uncharacterized protein.
 
  
 0.427
EJG06174.1
PFAM: Protein of unknown function DUF86; COGs: COG2361 conserved hypothetical protein; InterPro IPR008201; KEGG: mrb:Mrub_2705 hypothetical protein; PFAM: Protein of unknown function DUF86; SPTR: Putative uncharacterized protein.
 
  
 0.418
EJG06777.1
PFAM: Protein of unknown function DUF86; COGs: COG2361 conserved hypothetical protein; InterPro IPR008201; KEGG: tga:TGAM_2065 nucleotidyltransferase, putative; PFAM: Protein of unknown function DUF86; SPTR: Nucleotidyltransferase, putative; manually curated.
 
  
 0.404
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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