STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06770.1PFAM: Uncharacterized protein conserved in archaea (DUF2150); COGs: COG4749 conserved hypothetical protein; InterPro IPR014518; KEGG: mpl:Mpal_2134 hypothetical protein; PFAM: Uncharacterised conserved protein UCP022079; SPTR: Putative uncharacterized protein. (209 aa)    
Predicted Functional Partners:
EJG06771.1
COGs: COG1202 Superfamily II helicase; KEGG: mem:Memar_1610 superfamily II helicase-like protein; SPTR: Superfamily II helicase-like protein.
 
     0.976
EJG08344.1
PFAM: Oligosaccharyl transferase STT3 subunit; COGs: COG1287 membrane protein required for N-linked glycosylation; InterPro IPR003674; KEGG: mem:Memar_2235 oligosaccharyl transferase, STT3 subunit; PFAM: Oligosaccharyl transferase, STT3 subunit; SPTR: Oligosaccharyl transferase, STT3 subunit.
  
     0.740
EJG08297.1
PFAM: OB-fold nucleic acid binding domain; COGs: COG1599 Single-stranded DNA-binding replication protein A (RPA) large (70 kD) subunit and related ssDNA-binding protein; InterPro IPR004365; KEGG: mhu:Mhun_2542 nucleic acid binding, OB-fold, tRNA/helicase-type; PFAM: Nucleic acid binding, OB-fold, tRNA/helicase-type; SPTR: Nucleic acid binding, OB-fold, tRNA/helicase-type.
  
     0.739
EJG07636.1
Methanogenesis marker domain 9; PFAM: Dihydrouridine synthase (Dus); TIGRFAM: TIM-barrel protein, putative; putative methanogenesis marker domain 9; COGs: COG4008 metal-binding transcription factor; InterPro IPR017671; KEGG: mem:Memar_1729 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Putative methanogenesis marker domain 9.
  
     0.735
EJG07856.1
Exosortase EpsH-related protein; PFAM: Transmembrane exosortase (Exosortase_EpsH); COGs: COG4083 membrane protein; InterPro IPR019127; KEGG: mbn:Mboo_0910 cytochrome oxidase, subunit I, putative; PFAM: Exosortase EpsH-related; SPTR: Cytochrome oxidase, subunit I, putative.
  
     0.731
EJG06845.1
Hypothetical protein; PFAM: B-block binding subunit of TFIIIC; KEGG: mpl:Mpal_1540 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.727
EJG07526.1
Hypothetical protein; PFAM: CARDB; KEGG: mem:Memar_1820 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.719
EJG07156.1
KEGG: mem:Memar_0938 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.705
EJG06818.1
PFAM: Bacterial regulatory protein, arsR family; COGs: COG1777 transcriptional regulator protein; InterPro IPR001845; KEGG: mpl:Mpal_2059 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family.
  
     0.697
EJG07634.1
PFAM: Protein of unknown function (DUF447); COGs: COG2457 conserved hypothetical protein; InterPro IPR007386; KEGG: mpi:Mpet_0996 hypothetical protein; PFAM: Protein of unknown function DUF447; SPTR: Putative uncharacterized protein.
  
     0.692
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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