Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rps17ePFAM: Ribosomal S17; COGs: COG1383 Ribosomal protein S17E; HAMAP: Ribosomal protein S17e; InterPro IPR001210; KEGG: mem:Memar_1459 30S ribosomal protein S17e; PFAM: Ribosomal protein S17e; SPTR: 30S ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family. (64 aa)    
Predicted Functional Partners:
rps3
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
 
 0.999
rps6e
PFAM: Ribosomal protein S6e; COGs: COG2125 Ribosomal protein S6E (S10); HAMAP: 30S ribosomal protein S6e; InterPro IPR001377; KEGG: mbn:Mboo_2295 30S ribosomal protein S6e; PFAM: Ribosomal protein S6e; SPTR: 30S ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 0.999
rps15
PFAM: Ribosomal S13/S15 N-terminal domain; Ribosomal protein S15; COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR012606:IPR000589; KEGG: mpi:Mpet_2006 ribosomal S13S15 domain-containing protein; PFAM: Ribosomal protein S13/S15, N-terminal; Ribosomal protein S15; SPTR: 30S ribosomal protein S15P/S13e.
 
 0.999
rps7
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.
   
 0.998
rps19p
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
 0.998
rps4e
PFAM: S4 domain; Ribosomal family S4e; RS4NT (NUC023) domain; COGs: COG1471 Ribosomal protein S4E; HAMAP: 30S ribosomal protein S4e; InterPro IPR013843:IPR002942:IPR013845:IPR005824; KEGG: mpi:Mpet_2200 30S ribosomal protein S4E, central domain-containing protein; PFAM: Ribosomal protein S4e, central; Ribosomal protein S4e, N-terminal; RNA-binding S4; KOW; SMART: KOW; RNA-binding S4; SPTR: Ribosomal protein S4E, central domain protein; Belongs to the eukaryotic ribosomal protein eS4 family.
  
 0.998
rps14
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles.
   
 0.998
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
   
 0.998
rps2
PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein Sa(cytosolic)/S2(archaeal); COGs: COG0052 Ribosomal protein S2; InterPro IPR001865:IPR005707; KEGG: mbn:Mboo_2215 30S ribosomal protein S2; PFAM: Ribosomal protein S2; SPTR: 30S ribosomal protein S2P; TIGRFAM: Ribosomal protein S2, eukaryotic/archaeal; Belongs to the universal ribosomal protein uS2 family.
   
 0.998
rps13
Ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.
   
 0.998
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.