STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
albADNA/RNA-binding protein Alba; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family. (92 aa)    
Predicted Functional Partners:
EJG06863.1
PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms); COGs: COG0136 Aspartate-semialdehyde dehydrogenase; InterPro IPR000534:IPR012280:IPR005676; KEGG: mem:Memar_1455 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation region; SPTR: Aspartate-semialdehyde dehydrogenase; TIGRFAM: Aspartate-semialdehyde dehydrogenase, peptidoglycan lacking.
       0.796
EJG07684.1
PFAM: Uncharacterised protein family (UPF0147); COGs: COG1698 conserved hypothetical protein; HAMAP: UPF0147 protein; InterPro IPR005354; KEGG: mem:Memar_1416 hypothetical protein; PFAM: Uncharacterised protein family UPF0147; SPTR: UPF0147 protein Memar_1416; Belongs to the UPF0147 family.
  
     0.695
EJG07708.1
Conserved hypothetical protein CHP00061; PFAM: PAC2 family; TIGRFAM: TIGR00161 family protein; COGs: COG1938 protein of ATP-grasp superfamily; InterPro IPR004425:IPR002766; KEGG: mpl:Mpal_0692 protein of unknown function DUF75; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00061.
  
    0.673
EJG07761.1
PFAM: Protein of unknown function, DUF655; COGs: COG1491 RNA-binding protein; InterPro IPR007003; KEGG: mem:Memar_1959 hypothetical protein; PFAM: Protein of unknown function DUF655; SPTR: Putative uncharacterized protein.
  
     0.672
EJG07113.1
Putative PAS/PAC sensor protein; PFAM: PAS fold; TIGRFAM: PAS domain S-box; COGs: COG2202 FOG: PAS/PAC domain; InterPro IPR013655:IPR013656:IPR000014; KEGG: mmg:MTBMA_c12200 sensory transduction histidine kinase; PFAM: PAS fold-3; PAS fold-4; SMART: PAS; SPTR: Predicted sensory transduction histidine kinase; TIGRFAM: PAS.
      
 0.667
adkA
Adenylate kinase; PFAM: Protein of unknown function, DUF265; COGs: COG2019 adenylate kinase; KEGG: mem:Memar_0588 adenylate kinase; SPTR: Adenylate kinase; Belongs to the archaeal adenylate kinase family.
  
     0.626
EJG06865.1
KEGG: mem:Memar_1453 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.599
EJG07545.1
tRNA ribose 2'-O-methyltransferase aTrm56; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family.
  
     0.554
dnaG
UPF0095 protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
   
 0.552
EJG07817.1
Transcription factor CBF/NF-Y/histone domain-containing protein; PFAM: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; COGs: COG2036 Histones H3 and H4; InterPro IPR003958; KEGG: mem:Memar_1921 transcription factor CBF/NF-Y histone; PFAM: Transcription factor CBF/NF-Y/archaeal histone; SPTR: Archaeal histone.
  
   
 0.518
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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