STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06978.1PFAM: S-adenosylmethionine decarboxylase; InterPro IPR003826; KEGG: mem:Memar_2178 hypothetical protein; PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal; SPTR: Putative uncharacterized protein. (166 aa)    
Predicted Functional Partners:
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.792
EJG07492.1
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Carbon-nitrogen hydrolase; COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: mem:Memar_0715 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
 
 0.693
EJG07669.1
PFAM: Phosphorylase superfamily; COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR000845; KEGG: mem:Memar_1088 purine phosphorylase family 2; PFAM: Nucleoside phosphorylase; SPTR: Methylthioadenosine phosphorylase.
    
 0.680
EJG07826.1
PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine aminotransferases; COGs: COG4992 Ornithine/acetylornithine aminotransferase; HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase; InterPro IPR004636:IPR005814; KEGG: mem:Memar_1901 acetylornithine and succinylornithine aminotransferases; PFAM: Aminotransferase class-III; SPTR: Acetylornithine aminotransferase apoenzyme; TIGRFAM: Acetylornithine/succinylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.667
EJG07134.1
PFAM: Porphyromonas-type peptidyl-arginine deiminase; Carbon-nitrogen hydrolase; COGs: COG2957 Peptidylarginine deiminase; InterPro IPR003010:IPR007466; KEGG: mem:Memar_2038 peptidyl-arginine deiminase; PFAM: Peptidyl-arginine deiminase, Porphyromonas-type; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Agmatine deiminase.
  
 
 0.652
EJG07068.1
PFAM: S-adenosylmethionine synthetase (AdoMet synthetase); COGs: COG1812 S-adenosylmethionine synthetase; InterPro IPR002795; KEGG: mem:Memar_0838 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase (MAT), archaea; SPTR: Methionine adenosyltransferase.
     
 0.611
pdaD
PFAM: Pyruvoyl-dependent arginine decarboxylase (PvlArgDC); TIGRFAM: arginine decarboxylase, pyruvoyl-dependent; COGs: COG1945 conserved hypothetical protein; HAMAP: Pyruvoyl-dependent arginine decarboxylase; InterPro IPR002724; KEGG: mpi:Mpet_1794 arginine decarboxylase; PFAM: Pyruvoyl-dependent arginine decarboxylase; SPTR: Arginine decarboxylase, pyruvoyl-dependent; TIGRFAM: Pyruvoyl-dependent arginine decarboxylase; Belongs to the PdaD family.
  
  
 0.604
EJG07908.1
Protein of unknown function DUF107; PFAM: NfeD-like; InterPro IPR002810; KEGG: mem:Memar_0501 hypothetical protein; PFAM: Nodulation efficiency, NfeD; SPTR: Putative uncharacterized protein.
  
     0.585
rsmA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.
    
  0.581
EJG07433.1
PFAM: Orn/Lys/Arg decarboxylase, C-terminal domain; Orn/Lys/Arg decarboxylase, N-terminal domain; Orn/Lys/Arg decarboxylase, major domain; COGs: COG1982 Arginine/lysine/ornithine decarboxylase; InterPro IPR005308:IPR000310:IPR008286; KEGG: mem:Memar_1269 lysine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase, N-terminal; Orn/Lys/Arg decarboxylase, C-terminal; SPTR: Lysine decarboxylase.
     
 0.544
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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