STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06982.1Hypothetical protein. (75 aa)    
Predicted Functional Partners:
EJG06980.1
KEGG: mem:Memar_1260 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.768
EJG06981.1
KEGG: mem:Memar_1006 roadblock/LC7 family protein; SPTR: Roadblock/LC7 family protein.
       0.768
EJG06983.1
Histidine kinase HAMP region domain protein; PFAM: HAMP domain; InterPro IPR003660; KEGG: mpi:Mpet_2808 putative sensor with HAMP domain; PFAM: HAMP linker domain; SMART: HAMP linker domain; SPTR: Putative sensor with HAMP domain.
       0.768
EJG06979.1
Peptidase M1 membrane alanine aminopeptidase; PFAM: Domain of unknown function (DUF3458); Peptidase family M1; COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: mac:MA1605 membrane alanine aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; SPTR: Membrane alanine aminopeptidase.
       0.663
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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