STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06998.1COGs: COG3390 conserved hypothetical protein; KEGG: mem:Memar_1249 hypothetical protein; SPTR: Putative uncharacterized protein. (249 aa)    
Predicted Functional Partners:
EJG06997.1
Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase; COGs: COG1407 ICC-like phosphoesterase; InterPro IPR004843; KEGG: mem:Memar_1250 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Putative phosphoesterase.
 
   
 0.970
EJG06996.1
PFAM: Helicase conserved C-terminal domain; DEAD/H associated; DEAD/DEAH box helicase; COGs: COG1201 Lhr-like helicase; InterPro IPR011545:IPR001650:IPR013701:IPR014001; KEGG: mem:Memar_1251 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DEAD/H associated; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP dependent helicase, Lhr family.
 
     0.839
EJG08297.1
PFAM: OB-fold nucleic acid binding domain; COGs: COG1599 Single-stranded DNA-binding replication protein A (RPA) large (70 kD) subunit and related ssDNA-binding protein; InterPro IPR004365; KEGG: mhu:Mhun_2542 nucleic acid binding, OB-fold, tRNA/helicase-type; PFAM: Nucleic acid binding, OB-fold, tRNA/helicase-type; SPTR: Nucleic acid binding, OB-fold, tRNA/helicase-type.
 
  
 0.786
EJG06094.1
TIGRFAM: signal peptidase I, archaeal type; InterPro IPR001733; KEGG: mem:Memar_0046 peptidase S26B, signal peptidase; SPTR: Peptidase S26B, signal peptidase; TIGRFAM: Peptidase S26B, eukaryotic signal peptidase.
  
    0.747
EJG08077.1
PFAM: PRC-barrel domain; COGs: COG1873 conserved hypothetical protein; InterPro IPR007903; KEGG: mem:Memar_0401 PRC-barrel domain-containing protein; PFAM: PRC-barrel; SPTR: PRC-barrel domain protein.
  
     0.735
secE
Preprotein translocase subunit secE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.719
EJG08043.1
Protein of unknown function DUF2240; PFAM: Uncharacterized protein conserved in archaea (DUF2240); COGs: COG3612 conserved hypothetical protein; InterPro IPR018716; KEGG: mem:Memar_0465 hypothetical protein; PFAM: Protein of unknown function DUF2240; SPTR: Putative uncharacterized protein.
  
     0.716
EJG07760.1
PFAM: RNA polymerase Rpb4; COGs: COG1460 conserved hypothetical protein; InterPro IPR005574; KEGG: mpl:Mpal_0548 RNA polymerase Rpb4; PFAM: RNA polymerase II, Rpb4; SPTR: RNA polymerase Rpb4.
  
     0.714
EJG08249.1
PFAM: Protein of unknown function (DUF552); COGs: COG2450 conserved hypothetical protein; InterPro IPR012426; KEGG: mpl:Mpal_0398 protein of unknown function DUF1621; PFAM: Protein of unknown function DUF1621; SPTR: Putative uncharacterized protein.
  
     0.710
EJG07856.1
Exosortase EpsH-related protein; PFAM: Transmembrane exosortase (Exosortase_EpsH); COGs: COG4083 membrane protein; InterPro IPR019127; KEGG: mbn:Mboo_0910 cytochrome oxidase, subunit I, putative; PFAM: Exosortase EpsH-related; SPTR: Cytochrome oxidase, subunit I, putative.
  
     0.692
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.