STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07005.1PFAM: HxlR-like helix-turn-helix; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: mpl:Mpal_1617 transcriptional regulator, HxlR family; PFAM: Helix-turn-helix, HxlR type; SPTR: Transcriptional regulator, HxlR family. (117 aa)    
Predicted Functional Partners:
EJG06308.1
Transcriptional modulator of MazE/toxin, MazF; PFAM: PemK-like protein; COGs: COG2337 Growth inhibitor; InterPro IPR003477; KEGG: mem:Memar_1105 transcriptional modulator of MazE/toxin, MazF; PFAM: PemK-like protein; SPTR: Transcriptional modulator of MazE/toxin, MazF.
   
    0.600
EJG07004.1
KEGG: mpd:MCP_1380 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.540
EJG07006.1
Ribosome biogenesis GTPase RsgA; PFAM: Protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A; COGs: COG1162 GTPase; HAMAP: ribosome biogenesis GTPase RsgA; InterPro IPR004881; KEGG: mem:Memar_0890 ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; SPTR: Ribosome small subunit-dependent GTPase A; TIGRFAM: GTPase EngC.
       0.458
EJG07003.1
PFAM: Aldo/keto reductase family; COGs: COG1453 oxidoreductase of the aldo/keto reductase family; InterPro IPR001395; KEGG: mpl:Mpal_1623 aldo/keto reductase; PFAM: Aldo/keto reductase; SPTR: Aldo/keto reductase.
  
    0.423
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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