STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07037.1PFAM: Nitroreductase family; TIGRFAM: SagB-type dehydrogenase domain; COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: mem:Memar_0857 nitroreductase; PFAM: Nitroreductase-like; SPTR: Nitroreductase. (176 aa)    
Predicted Functional Partners:
ribL
Cytidyltransferase-related domain protein; Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme.
    
  0.949
EJG07038.1
KEGG: mbn:Mboo_1661 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.945
EJG07035.1
PfkB domain protein; PFAM: pfkB family carbohydrate kinase; COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: mpl:Mpal_1085 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.885
EJG07036.1
PFAM: Protein of unknown function (DUF555); COGs: COG1885 conserved hypothetical protein; HAMAP: Uncharacterised protein family UPF0212; InterPro IPR007564; KEGG: mem:Memar_0858 hypothetical protein; PFAM: Uncharacterised protein family UPF0212; SPTR: UPF0212 protein Memar_0858; Belongs to the UPF0212 family.
       0.882
EJG07034.1
Protein of unknown function DUF2070, membrane; PFAM: Predicted membrane protein (DUF2070); COGs: COG3356 membrane protein; InterPro IPR019204; KEGG: mem:Memar_0860 hypothetical protein; PFAM: Protein of unknown function DUF2070, membrane; SPTR: Putative uncharacterized protein.
 
     0.704
EJG07039.1
KEGG: mem:Memar_0855 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.644
EJG08346.1
Methanogenesis marker protein 1; PFAM: YcaO-like family; TIGRFAM: uncharacterized domain; putative methanogenesis marker protein 1; bacteriocin biosynthesis docking scaffold, SagD family; COGs: COG1944 conserved hypothetical protein; InterPro IPR003776:IPR017667; KEGG: mem:Memar_2237 hypothetical protein; PFAM: YcaO-like; SPTR: Putative uncharacterized protein; TIGRFAM: Putative methanogenesis marker protein 1; YcaO-like.
  
  
 0.615
EJG06344.1
AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: mem:Memar_2154 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; SPTR: AMP-dependent synthetase and ligase.
   
 
 0.613
EJG07672.1
AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: mpl:Mpal_1032 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; SPTR: AMP-dependent synthetase and ligase.
   
 
 0.613
gatD
Glutamyl-tRNA(Gln) amidotransferase subunit D; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate.
 
     0.569
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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