STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07166.1KEGG: mem:Memar_1307 hypothetical protein; SPTR: Putative uncharacterized protein. (132 aa)    
Predicted Functional Partners:
EJG07165.1
26S proteasome subunit P45 family; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: 26S proteasome subunit P45 family; COGs: COG1222 ATP-dependent 26S proteasome regulatory subunit; InterPro IPR003959:IPR005937:IPR003593; KEGG: mem:Memar_1308 proteasome-activating nucleotidase; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: Proteasome-activating nucleotidase; TIGRFAM: 26S proteasome subunit P45.
       0.854
EJG07164.1
PFAM: Protein of unknown function DUF126; COGs: COG1786 conserved hypothetical protein; HAMAP: Uncharacterised protein family, UPF0107; InterPro IPR002840:IPR020794; KEGG: mbn:Mboo_1457 hypothetical protein; PFAM: Protein of unknown function DUF126; SPTR: Putative uncharacterized protein; Belongs to the UPF0107 family.
       0.588
EJG07163.1
PFAM: Radical SAM superfamily; B12 binding domain; TIGRFAM: B12-binding domain/radical SAM domain protein, MJ_1487 family; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006158:IPR007197:IPR006638; KEGG: mem:Memar_0931 radical SAM domain-containing protein; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein.
       0.547
EJG07162.1
Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase; COGs: COG2129 phosphoesterase related to the Icc protein; InterPro IPR004843; KEGG: mpl:Mpal_1324 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase.
       0.533
thiI
tRNA sulfurtransferase; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
       0.400
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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