STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07367.1Radical SAM domain protein; COGs: COG1313 Uncharacterized Fe-S protein PflX homolog of pyruvate formate lyase activating protein; InterPro IPR007197; KEGG: mem:Memar_1667 radical SAM domain-containing protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein. (314 aa)    
Predicted Functional Partners:
EJG07366.1
Blue (type 1) copper domain protein; PFAM: Copper binding proteins, plastocyanin/azurin family; InterPro IPR000923; KEGG: mpl:Mpal_1285 blue (type 1) copper domain protein; PFAM: Blue (type 1) copper domain; SPTR: Blue (Type 1) copper domain protein.
       0.773
EJG07365.1
PFAM: Uncharacterized protein family UPF0029; COGs: COG1739 conserved hypothetical protein; InterPro IPR001498; KEGG: mem:Memar_2485 hypothetical protein; PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; SPTR: Putative uncharacterized protein.
       0.550
EJG07369.1
PFAM: CutA1 divalent ion tolerance protein; COGs: COG1324 conserved hypothetical protein involved in tolerance to divalent cations; InterPro IPR004323; KEGG: alv:Alvin_1911 CutA1 divalent ion tolerance protein; PFAM: Divalent ion tolerance protein, CutA1; SPTR: CutA1 divalent ion tolerance protein.
       0.485
EJG07370.1
GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family; COGs: COG0456 Acetyltransferase; InterPro IPR000182; KEGG: mem:Memar_1941 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: [SSU ribosomal protein S18P]-alanine acetyltransferase.
       0.413
EJG07997.1
PFAM: Putative modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: mbn:Mboo_2389 peptidase U62, modulator of DNA gyrase; PFAM: Peptidase U62, modulator of DNA gyrase; SPTR: Peptidase U62, modulator of DNA gyrase; overlaps another CDS with the same product name.
       0.407
EJG07996.1
PFAM: Putative modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: mem:Memar_0277 peptidase U62, modulator of DNA gyrase; PFAM: Peptidase U62, modulator of DNA gyrase; SPTR: Peptidase U62, modulator of DNA gyrase; overlaps another CDS with the same product name.
       0.404
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.