STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07387.1Rubredoxin; PFAM: Ferredoxin thioredoxin reductase catalytic beta chain; COGs: COG4802 Ferredoxin-thioredoxin reductase catalytic subunit; KEGG: mem:Memar_2454 rubredoxin; SPTR: Rubredoxin. (164 aa)    
Predicted Functional Partners:
EJG07388.1
PFAM: Glutaredoxin; COGs: COG0695 Glutaredoxin and related protein; InterPro IPR002109; KEGG: mpi:Mpet_1341 glutaredoxin; PFAM: Glutaredoxin; SPTR: Glutaredoxin.
 
   
 0.985
EJG07391.1
KEGG: mem:Memar_1533 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.637
EJG07389.1
HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR006402:IPR006439:IPR005834; KEGG: mem:Memar_1535 HAD family hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; [...]
       0.636
EJG07390.1
KEGG: mem:Memar_1534 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.636
EJG07386.1
PFAM: SIS domain; TIGRFAM: 6-phospho 3-hexuloisomerase; COGs: COG0794 sugar phosphate isomerase involved in capsule formation; InterPro IPR017552:IPR001347; KEGG: mem:Memar_1507 sugar isomerase (SIS); PFAM: Sugar isomerase (SIS); SPTR: 3-hexulose-6-phosphate isomerase; TIGRFAM: 6-phospho 3-hexuloisomerase; manually curated.
       0.572
EJG07385.1
PFAM: Aminotransferase class I and II; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: mbn:Mboo_1200 aminotransferase, class I and II; PFAM: Aminotransferase, class I/II; SPTR: Aminotransferase, class I and II.
       0.568
EJG07384.1
PFAM: M42 glutamyl aminopeptidase; COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: mbn:Mboo_1201 peptidase M42 family protein; PFAM: Peptidase M42; SPTR: Peptidase M42 family protein.
       0.557
EJG07392.1
PFAM: ABC transporter; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003593:IPR003439; KEGG: mhu:Mhun_0246 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein.
       0.522
EJG07393.1
ABC-type transporter, integral membrane subunit; PFAM: FecCD transport family; COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: mem:Memar_2330 transport system permease protein; PFAM: Bacterial transport system permease protein; SPTR: Transport system permease protein.
       0.522
EJG07394.1
PFAM: Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: mem:Memar_2328 periplasmic binding protein; PFAM: Periplasmic binding protein; SPTR: Periplasmic binding protein.
       0.439
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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