STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07423.1Hypothetical protein; PFAM: Metallo-beta-lactamase superfamily; COGs: COG2248 hydrolase (metallo-beta-lactamase superfamily); KEGG: mma:MM_2966 hypothetical protein; SPTR: UPF0282 protein MM_2966. (298 aa)    
Predicted Functional Partners:
EJG07739.1
PFAM: Domain of unknown function (DUF371); COGs: COG2090 conserved hypothetical protein; InterPro IPR007171; KEGG: mem:Memar_1982 hypothetical protein; PFAM: Protein of unknown function DUF371; SPTR: Putative uncharacterized protein.
  
   
 0.485
EJG07077.1
PFAM: Peptidase family M54; COGs: COG1913 Zn-dependent protease; InterPro IPR012962; KEGG: mpl:Mpal_1753 peptidase zinc-dependent; PFAM: Peptidase M54, archaemetzincin; SPTR: Peptidase zinc-dependent.
  
     0.436
albA
DNA/RNA-binding protein Alba; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family.
  
   
 0.433
EJG07668.1
PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: putative nicotinate phosphoribosyltransferase; COGs: COG1488 Nicotinic acid phosphoribosyltransferase; InterPro IPR002638; KEGG: mbn:Mboo_0766 quinolinate phosphoribosyl transferase; PFAM: Quinolinate phosphoribosyl transferase; SPTR: Quinolinate phosphoribosyl transferase.
 
     0.423
EJG06847.1
PFAM: DHH family; DRTGG domain; DHHA2 domain; CBS domain; COGs: COG1227 Inorganic pyrophosphatase/exopolyphosphatase; InterPro IPR000644:IPR001667:IPR010766:IPR004097; KEGG: mem:Memar_0491 putative manganese-dependent inorganic pyrophosphatase; PFAM: Cystathionine beta-synthase, core; Phosphoesterase, RecJ-like; DRTGG; DHHA2; SMART: Cystathionine beta-synthase, core; SPTR: Inorganic diphosphatase.
       0.407
EJG07422.1
RNP-1 like RNA-binding protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); COGs: COG0724 RNA-binding protein (RRM domain); InterPro IPR000504; KEGG: mpi:Mpet_1163 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif, RNP-1; SMART: RNA recognition motif, RNP-1; SPTR: RNP-1 like RNA-binding protein.
       0.403
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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