STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07436.1PFAM: UV-endonuclease UvdE; TIGRFAM: UV damage endonuclease UvdE; COGs: COG4294 UV damage repair endonuclease; InterPro IPR004601; KEGG: mem:Memar_1722 putative UV damage endonuclease; PFAM: UV-endonuclease UvdE; SPTR: UV-endonuclease UvdE; TIGRFAM: UV-endonuclease UvdE. (297 aa)    
Predicted Functional Partners:
EJG07435.1
PFAM: UV-endonuclease UvdE; COGs: COG4294 UV damage repair endonuclease; KEGG: mem:Memar_1722 putative UV damage endonuclease; SPTR: UV-endonuclease UvdE.
 
    
0.733
EJG07437.1
AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme; COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: mem:Memar_0750 phenylacetate--CoA ligase; PFAM: AMP-dependent synthetase/ligase; SPTR: Phenylacetate-CoA ligase.
       0.507
EJG07438.1
AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme; COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: mpl:Mpal_2123 phenylacetate--CoA ligase; PFAM: AMP-dependent synthetase/ligase; SPTR: Phenylacetate--CoA ligase.
       0.507
EJG07439.1
PFAM: ACT domain; COGs: COG4747 ACT domain-containing protein; InterPro IPR002912; KEGG: mem:Memar_0748 amino acid-binding ACT domain-containing protein; PFAM: Amino acid-binding ACT; SPTR: Amino acid-binding ACT domain protein.
       0.507
lysS
PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial; COGs: COG1190 Lysyl-tRNA synthetase (class II); HAMAP: Lysyl-tRNA synthetase; InterPro IPR002313:IPR004365:IPR004364; KEGG: mem:Memar_2341 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; SPTR: Lysyl-tRNA synthetase; TIGRFAM: Lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.453
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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