STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07555.1Hypothetical protein; KEGG: mhu:Mhun_0418 PKD; SPTR: PKD. (597 aa)    
Predicted Functional Partners:
EJG07177.1
KEGG: mem:Memar_0640 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.731
EJG06451.1
Hypothetical protein; KEGG: fpl:Ferp_2079 prenyltransferase/squalene oxidase; SPTR: Prenyltransferase/squalene oxidase.
  
  
  0.513
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.430
EJG07554.1
PFAM: Bacterial regulatory protein, arsR family; InterPro IPR001845; KEGG: mbn:Mboo_1266 regulatory protein, ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Regulatory protein, ArsR.
       0.430
EJG06267.1
Regulatory protein ArsR; COGs: COG3398 conserved hypothetical protein; InterPro IPR001845; KEGG: mpl:Mpal_0760 transcriptional regulator, ArsR family; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family.
  
  
  0.414
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.