STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07560.1PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; COGs: COG3260 Ni Fe-hydrogenase III small subunit; InterPro IPR006137; KEGG: mhu:Mhun_1743 NADH ubiquinone oxidoreductase, 20 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; SPTR: Ech hydrogenase subunit C. (147 aa)    
Predicted Functional Partners:
EJG07562.1
NADH-ubiquinone oxidoreductase chain 49kDa; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; Nickel-dependent hydrogenase; COGs: COG3261 Ni Fe-hydrogenase III large subunit; InterPro IPR001501:IPR001135; KEGG: mbn:Mboo_0028 NADH dehydrogenase (ubiquinone); PFAM: NADH-quinone oxidoreductase, subunit D; Nickel-dependent hydrogenase, large subunit; SPTR: NADH dehydrogenase (Ubiquinone).
 0.999
EJG07559.1
PFAM: NADH dehydrogenase; COGs: COG0650 Formate hydrogenlyase subunit 4; InterPro IPR001694; KEGG: mem:Memar_0363 respiratory-chain NADH dehydrogenase, subunit 1; PFAM: NADH:ubiquinone oxidoreductase, subunit 1; SPTR: Ech hydrogenase subunit B.
 
 0.998
EJG06922.1
NADH-ubiquinone oxidoreductase chain 49kDa; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; Nickel-dependent hydrogenase; COGs: COG3261 Ni Fe-hydrogenase III large subunit; InterPro IPR001501:IPR001135; KEGG: mpi:Mpet_1573 NADH-ubiquinone oxidoreductase subunit 49kDa; PFAM: NADH-quinone oxidoreductase, subunit D; Nickel-dependent hydrogenase, large subunit; SPTR: NADH-ubiquinone oxidoreductase chain 49kDa.
 0.991
EJG06957.1
NADH-ubiquinone oxidoreductase chain 49kDa; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; Nickel-dependent hydrogenase; COGs: COG3261 Ni Fe-hydrogenase III large subunit; InterPro IPR001135; KEGG: mem:Memar_1184 NADH dehydrogenase (ubiquinone); PFAM: NADH-quinone oxidoreductase, subunit D; SPTR: Membrane-bound hydrogenase subunit ehaO.
 0.991
EJG07563.1
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S binding domain; COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); InterPro IPR001450; KEGG: mbn:Mboo_0029 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
 0.989
EJG07558.1
PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains; COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR001750; KEGG: mem:Memar_0364 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; SPTR: Ech hydrogenase subunit A.
 
  
 0.978
EJG06921.1
PFAM: NADH dehydrogenase; COGs: COG0650 Formate hydrogenlyase subunit 4; InterPro IPR001694; KEGG: mpi:Mpet_1572 respiratory-chain NADH dehydrogenase subunit 1; PFAM: NADH:ubiquinone oxidoreductase, subunit 1; SPTR: Respiratory-chain NADH dehydrogenase subunit 1.
 
 0.970
EJG07561.1
PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; InterPro IPR001268; KEGG: mpi:Mpet_0466 NADH dehydrogenase (ubiquinone) 30 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; SPTR: NADH dehydrogenase (Ubiquinone) 30 kDa subunit.
 
     0.968
EJG06953.1
PFAM: NADH dehydrogenase; COGs: COG0650 Formate hydrogenlyase subunit 4; InterPro IPR001694; KEGG: mem:Memar_1180 respiratory-chain NADH dehydrogenase, subunit 1; PFAM: NADH:ubiquinone oxidoreductase, subunit 1; SPTR: Membrane-bound hydrogenase subunit ehaJ.
 
 0.957
EJG06920.1
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S binding domain; COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); InterPro IPR001450; KEGG: mpi:Mpet_1571 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
 0.931
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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