STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07592.1TatD-related deoxyribonuclease; PFAM: TatD related DNase; COGs: COG1831 metal-dependent hydrolase (urease superfamily); InterPro IPR001130; KEGG: mem:Memar_1240 TatD-related deoxyribonuclease; PFAM: Deoxyribonuclease, TatD-related; SPTR: TatD-related deoxyribonuclease. (275 aa)    
Predicted Functional Partners:
mptD
Protein of unknown function DUF381; Catalyzes the conversion of 7,8-dihydroneopterin (H2Neo) to 6-hydroxymethyl-7,8-dihydropterin (6-HMD); Belongs to the archaeal dihydroneopterin aldolase family.
 
     0.959
EJG07594.1
PFAM: NMD3 family; COGs: COG1499 NMD protein affecting ribosome stability and mRNA decay; InterPro IPR007064; KEGG: mem:Memar_1238 hypothetical protein; PFAM: NMD3; SPTR: Nmd3.
 
     0.898
EJG07590.1
Hypothetical protein; COGs: COG1549 Queuine tRNA-ribosyltransferase contain PUA domain; KEGG: mla:Mlab_0587 hypothetical protein; SPTR: Queuine tRNA-ribosyltransferase containing PUA domain-like protein.
 
     0.788
EJG07598.1
PFAM: Protein of unknown function DUF137; COGs: COG1701 conserved hypothetical protein; InterPro IPR002855; KEGG: mem:Memar_1234 hypothetical protein; PFAM: Protein of unknown function DUF137; SPTR: Pantothenate synthetase.
 
     0.784
EJG07597.1
PFAM: GHMP kinases N terminal domain; COGs: COG1829 kinase (sugar kinase superfamily); InterPro IPR006204; KEGG: mem:Memar_1235 GHMP kinase; PFAM: GHMP kinase; SPTR: Pantothenate kinase.
 
     0.767
rpl40e
PFAM: Ribosomal L40e family; HAMAP: 50S ribosomal protein L40e; InterPro IPR001975; KEGG: mbn:Mboo_0238 50S ribosomal protein L40e; PFAM: Ribosomal protein L40e; SPTR: 50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
  
     0.734
EJG07596.1
PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic; COGs: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR005252:IPR003382:IPR007085; KEGG: mem:Memar_1236 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: Flavoprotein; DNA/pantothenate metabolism flavoprotein, C-terminal; SPTR: Phosphopantothenate-cysteine ligase; TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase.
 
     0.724
EJG07593.1
PFAM: Protein of unknown function (DUF424); COGs: COG2412 conserved hypothetical protein; InterPro IPR007355; KEGG: mem:Memar_1239 hypothetical protein; PFAM: Protein of unknown function DUF424; SPTR: Putative uncharacterized protein.
       0.708
EJG07173.1
PFAM: PUA domain; TIGRFAM: uncharacterized domain 2; COGs: COG1549 Queuine tRNA-ribosyltransferase contain PUA domain; InterPro IPR002478:IPR004521; KEGG: mem:Memar_1286 PUA domain-containing protein; PFAM: Pseudouridine synthase/archaeosine transglycosylase; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR: tRNA-archaeosine synthase.
  
     0.698
EJG07595.1
Protein of unknown function Met10; PFAM: Met-10+ like-protein; COGs: COG2520 methyltransferase; InterPro IPR003402; KEGG: mbn:Mboo_1668 protein of unknown function Met10; PFAM: Protein of unknown function Met10; SPTR: Putative uncharacterized protein.
       0.683
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.