STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07630.1Hypothetical protein; PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit; COGs: COG1456 CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein); KEGG: mhu:Mhun_0876 hypothetical protein; SPTR: Putative uncharacterized protein. (342 aa)    
Predicted Functional Partners:
EJG07629.1
InterPro IPR001450; KEGG: mhu:Mhun_0875 4Fe-4S ferredoxin, iron-sulfur binding; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding protein; manually curated.
 
     0.963
EJG07631.1
Transcriptional regulator, AbrB family; PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family; InterPro IPR006339:IPR007159; KEGG: mhu:Mhun_0877 AbrB family transcriptional regulator; PFAM: Transcription regulator AbrB/SpoV, predicted; SPTR: Transcriptional regulator, AbrB family; TIGRFAM: Transcription regulator AbrB.
 
     0.908
EJG07929.1
Cobyrinic acid ac-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; COGs: COG3640 CO dehydrogenase maturation factor; InterPro IPR003593:IPR002586; KEGG: mpi:Mpet_0908 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; SMART: ATPase, AAA+ type, core; SPTR: Cobyrinic acid ac-diamide synthase.
 
  
 0.817
folD
Bifunctional protein folD; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
    
 0.731
EJG08304.1
acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; COGs: COG0183 Acetyl-CoA acetyltransferase; KEGG: mpl:Mpal_2509 acetyl-CoA acetyltransferase; SPTR: Thiolase.
     
 0.652
EJG06474.1
Molybdopterin dinucleotide-binding region; PFAM: Molydopterin dinucleotide binding domain; COGs: COG1153 Formylmethanofuran dehydrogenase subunit D; InterPro IPR006657; KEGG: mem:Memar_0621 molydopterin dinucleotide-binding region; PFAM: Molydopterin dinucleotide-binding region; SPTR: Formylmethanofuran dehydrogenase, subunit D; manually curated.
 
  
 0.621
ftr
formylmethanofuran/tetrahydromethanopterinN-form yltransferase; Catalyzes the reversible transfer of a formyl group from formylmethanofuran (formyl-MFR) to tetrahydromethanopterin (H(4)MPT) so as to produce 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) and methanofuran (MFR); Belongs to the FTR family.
     
 0.611
EJG06459.1
PFAM: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); TIGRFAM: tetrahydromethanopterin S-methyltransferase, F subunit; InterPro IPR013347; KEGG: mpl:Mpal_2315 tetrahydromethanopterin S-methyltransferase subunit F; PFAM: Tetrahydromethanopterin S-methyltransferase, F subunit; SPTR: Tetrahydromethanopterin S-methyltransferase, F subunit; TIGRFAM: Tetrahydromethanopterin S-methyltransferase, F subunit.
     
 0.602
mtrB
Tetrahydromethanopterin S-methyltransferase subunit B; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.
     
 0.602
EJG07930.1
PFAM: Prismane/CO dehydrogenase family; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; COGs: COG1151 6Fe-6S prismane cluster-containing protein; InterPro IPR010047:IPR004137; KEGG: mpi:Mpet_0907 carbon-monoxide dehydrogenase catalytic subunit; PFAM: Prismane; SPTR: Carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: Carbon-monoxide dehydrogenase, catalytic subunit.
  
  
  0.600
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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