STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07674.1PFAM: Mechanosensitive ion channel; COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: afu:AF1546 hypothetical protein; PFAM: Mechanosensitive ion channel MscS; SPTR: Uncharacterized mscS family protein AF_1546. (310 aa)    
Predicted Functional Partners:
EJG07675.1
PFAM: Protein of unknown function (DUF432); COGs: COG2430 conserved hypothetical protein; InterPro IPR007366; KEGG: mpl:Mpal_0513 protein of unknown function DUF432; PFAM: Protein of unknown function DUF432; SPTR: Putative uncharacterized protein; manually curated.
       0.794
EJG07594.1
PFAM: NMD3 family; COGs: COG1499 NMD protein affecting ribosome stability and mRNA decay; InterPro IPR007064; KEGG: mem:Memar_1238 hypothetical protein; PFAM: NMD3; SPTR: Nmd3.
   
    0.589
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.