STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07708.1Conserved hypothetical protein CHP00061; PFAM: PAC2 family; TIGRFAM: TIGR00161 family protein; COGs: COG1938 protein of ATP-grasp superfamily; InterPro IPR004425:IPR002766; KEGG: mpl:Mpal_0692 protein of unknown function DUF75; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00061. (251 aa)    
Predicted Functional Partners:
EJG07707.1
PFAM: Protein of unknown function (DUF473); COGs: COG1935 conserved hypothetical protein; InterPro IPR007417; KEGG: mbn:Mboo_1928 hypothetical protein; PFAM: Protein of unknown function DUF473; SPTR: Putative uncharacterized protein.
  
 
 0.993
EJG07297.1
Hypothetical protein; COGs: COG3467 flavin-nucleotide-binding protein; KEGG: mem:Memar_1429 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.884
EJG08064.1
PFAM: NADPH-dependent FMN reductase; COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR005025; KEGG: mpi:Mpet_0277 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase; SPTR: NADPH-dependent FMN reductase.
   
    0.833
EJG07928.1
PFAM: Pyridoxamine 5'-phosphate oxidase; COGs: COG3467 flavin-nucleotide-binding protein; InterPro IPR011576; KEGG: kcr:Kcr_0386 pyridoxamine 5'-phosphate oxidase-related FMN-binding; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SPTR: Pyridoxamine 5'-phosphate oxidase-related FMN-binding; manually curated.
   
    0.773
EJG06153.1
PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; InterPro IPR002616; KEGG: ton:TON_0617 7-cyano-7-deazaguanine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; SPTR: 7-cyano-7-deazaguanine tRNA-ribosyltransferase; TIGRFAM: Queuine/other tRNA-ribosyltransferase; manually curated.
       0.745
EJG06834.1
Hypothetical protein; COGs: COG0237 Dephospho-CoA kinase; KEGG: mem:Memar_1556 hypothetical protein; SPTR: UPF0200 protein Memar_1556.
 
     0.688
psmA
Proteasome endopeptidase complex, alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
    
 
 0.677
albA
DNA/RNA-binding protein Alba; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family.
  
    0.673
EJG07709.1
KEGG: mem:Memar_2009 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.665
EJG07684.1
PFAM: Uncharacterised protein family (UPF0147); COGs: COG1698 conserved hypothetical protein; HAMAP: UPF0147 protein; InterPro IPR005354; KEGG: mem:Memar_1416 hypothetical protein; PFAM: Uncharacterised protein family UPF0147; SPTR: UPF0147 protein Memar_1416; Belongs to the UPF0147 family.
  
     0.645
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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