STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07721.1Roadblock/LC7 family protein; PFAM: Roadblock/LC7 domain; InterPro IPR004942; KEGG: mem:Memar_1005 roadblock/LC7 family protein; PFAM: Dynein light chain-related; SPTR: Roadblock/LC7 family protein. (227 aa)    
Predicted Functional Partners:
EJG07720.1
Roadblock/LC7 family protein; PFAM: Roadblock/LC7 domain; COGs: COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid; InterPro IPR004942; KEGG: mem:Memar_1006 roadblock/LC7 family protein; PFAM: Dynein light chain-related; SPTR: Roadblock/LC7 family protein.
       0.814
EJG07716.1
InterPro IPR001450; KEGG: mpi:Mpet_2721 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein.
       0.799
EJG07717.1
KEGG: mpi:Mpet_2720 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.799
EJG07718.1
PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; COGs: COG1941 Coenzyme F420-reducing hydrogenase gamma subunit; InterPro IPR006137; KEGG: mem:Memar_1008 NADH ubiquinone oxidoreductase, 20 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; SPTR: F420-non-reducing hydrogenase subunit G.
       0.799
EJG07719.1
PFAM: Nickel-dependent hydrogenase; COGs: COG3259 Coenzyme F420-reducing hydrogenase alpha subunit; InterPro IPR001501; KEGG: mem:Memar_1007 nickel-dependent hydrogenase, large subunit; PFAM: Nickel-dependent hydrogenase, large subunit; SPTR: F420-non-reducing hydrogenase subunit A; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
       0.791
EJG07722.1
Hypothetical protein.
       0.773
hisI
Phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.
       0.542
EJG07715.1
Peptidase A24B, FlaK domain protein; PFAM: Archaeal Peptidase A24 C-terminus Type II; InterPro IPR009655; KEGG: mem:Memar_2005 peptidase A24A, prepilin type IV; PFAM: Peptidase A24B, preflagellin, C-terminal; SPTR: Peptidase A24A, prepilin type IV.
       0.542
EJG07723.1
Cell division ATPase MinD; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: cell division ATPase MinD, archaeal; COGs: COG0455 ATPase involved in chromosome partitioning; InterPro IPR010224:IPR002586; KEGG: mem:Memar_0293 cell division ATPase MinD; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Septum site-determining protein MinD; TIGRFAM: ATPase, cell division-type, MinD.
       0.500
EJG07713.1
PFAM: Type II/IV secretion system protein; PIN domain; COGs: COG1855 ATPase (PilT family); InterPro IPR002716:IPR006596:IPR003593; KEGG: mem:Memar_2007 ATPase; PFAM: PilT protein, N-terminal; SMART: Nucleotide binding protein, PINc; ATPase, AAA+ type, core; SPTR: ATPase, PilT family.
       0.488
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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