Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rpl21ePFAM: Ribosomal protein L21e; COGs: COG2139 Ribosomal protein L21E; HAMAP: 50S ribosomal protein L21e; InterPro IPR001147; KEGG: mpl:Mpal_0547 50S ribosomal protein L21e; PFAM: Ribosomal protein L21e; SPTR: 50S ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family. (97 aa)    
Predicted Functional Partners:
EJG06430.1
PFAM: Ribosomal protein L32; COGs: COG1717 Ribosomal protein L32E; InterPro IPR001515; KEGG: mpi:Mpet_2205 50S ribosomal protein L32e; PFAM: Ribosomal protein L32e; SPTR: Ribosomal protein L32e.
  
 0.999
rpl19e
Ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.
  
 0.999
rpl15e
PFAM: Ribosomal L15; COGs: COG1632 Ribosomal protein L15E; HAMAP: 50S ribosomal protein L15e; InterPro IPR000439; KEGG: mpl:Mpal_2529 50S ribosomal protein L15e; PFAM: Ribosomal protein L15e; SPTR: Ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.
  
 0.999
rpl37ae
50S ribosomal protein L37Ae; Binds to the 23S rRNA.
 
 
 0.999
rpl7ae
50S ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
  
 0.999
rpl24e
50S ribosomal protein L24e; Binds to the 23S rRNA.
  
 0.999
rps19e
Ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
 
 
 0.999
rpl31e
PFAM: Ribosomal protein L31e; COGs: COG2097 Ribosomal protein L31E; HAMAP: 50S ribosomal protein L31e; InterPro IPR000054; KEGG: mem:Memar_1969 50S ribosomal protein L31e; PFAM: Ribosomal protein L31e; SPTR: 50S ribosomal protein L31e; Belongs to the ribosomal protein L31e family.
 
 0.999
rpl18a
PFAM: Ribosomal L18ae/LX protein domain; InterPro IPR002768; KEGG: mem:Memar_1967 ribosomal LX protein; PFAM: Ribosomal protein LX; SPTR: LSU ribosomal protein LX.
  
 0.999
rpl3
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
 0.998
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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