STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07767.1Parallel beta-helix repeat protein; PFAM: Periplasmic copper-binding protein (NosD); PKD domain; TIGRFAM: parallel beta-helix repeat (two copies); COGs: COG3291 FOG: PKD repeat; InterPro IPR000601:IPR007742:IPR006626; KEGG: mhu:Mhun_0644 periplasmic copper-binding; PFAM: PKD; Periplasmic copper-binding; SMART: PKD; Parallel beta-helix repeat; SPTR: Periplasmic copper-binding protein; TIGRFAM: parallel beta-helix repeat. (790 aa)    
Predicted Functional Partners:
EJG06605.1
PFAM: Protein of unknown function (DUF1628); PA14 domain; PKD domain; COGs: COG3291 FOG: PKD repeat; InterPro IPR000601:IPR011658:IPR006558:IPR012859; KEGG: mpi:Mpet_0741 PKD domain-containing protein; PFAM: PKD; Protein of unknown function DUF1628; PA14; SMART: PKD; PA14; LamG-like jellyroll fold; SPTR: PKD domain containing protein.
  
  
 
0.969
EJG08370.1
PFAM: NHL repeat; PKD domain; COGs: COG3291 FOG: PKD repeat; InterPro IPR018391:IPR000601:IPR001258; KEGG: mpl:Mpal_2630 PKD domain containing protein; PFAM: PKD; NHL repeat; SMART: PKD; Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: PKD domain containing protein.
  
  
 
0.964
EJG06246.1
beta-Ig-H3/fasciclin; PFAM: Fasciclin domain; PKD domain; COGs: COG3291 FOG: PKD repeat; InterPro IPR000601:IPR000782; KEGG: mhu:Mhun_0597 PKD; PFAM: FAS1 domain; PKD; SMART: FAS1 domain; PKD; SPTR: PKD.
  
  
 
0.963
EJG07501.1
PFAM: YycH protein; KEGG: mbn:Mboo_1423 PKD domain-containing protein; SPTR: PKD domain containing protein; manually curated.
    
  0.817
EJG07768.1
KEGG: mem:Memar_0639 PKD domain-containing protein; SPTR: PKD domain containing protein.
       0.693
EJG07126.1
PFAM: PKD domain; COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: mac:MA1764 cell surface protein; PFAM: PKD; SMART: PKD; SPTR: Cell surface protein.
 
  
 
0.645
EJG07124.1
PFAM: PKD domain; COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: mac:MA4297 cell surface protein; PFAM: PKD; SMART: PKD; SPTR: Cell surface protein.
  
  
 
0.642
EJG07447.1
APHP domain protein; PFAM: Protein of unknown function (DUF3344); CARDB; InterPro IPR011635; KEGG: mac:MA1766 cell surface protein; PFAM: APHP; SPTR: Cell surface protein.
    
  0.544
EJG07451.1
Cell surface glycoprotein; PFAM: Protein of unknown function (DUF3344); KEGG: mpi:Mpet_0021 cell surface glycoprotein; SPTR: Cell surface glycoprotein.
    
  0.544
EJG07856.1
Exosortase EpsH-related protein; PFAM: Transmembrane exosortase (Exosortase_EpsH); COGs: COG4083 membrane protein; InterPro IPR019127; KEGG: mbn:Mboo_0910 cytochrome oxidase, subunit I, putative; PFAM: Exosortase EpsH-related; SPTR: Cytochrome oxidase, subunit I, putative.
 
    0.514
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.