STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07844.1PFAM: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; COGs: COG1035 Coenzyme F420-reducing hydrogenase beta subunit; InterPro IPR007516:IPR007525; KEGG: mem:Memar_1378 coenzyme F420 hydrogenase/dehydrogenase beta subunit; PFAM: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal; SPTR: Formate dehydrogenase, beta subunit (F420). (413 aa)    
Predicted Functional Partners:
EJG06475.1
PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; COGs: COG1908 Coenzyme F420-reducing hydrogenase delta subunit; InterPro IPR003813; KEGG: mpi:Mpet_2476 methyl-viologen-reducing hydrogenase subunit delta; PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; SPTR: Methyl-viologen-reducing hydrogenase delta subunit.
 
 0.999
EJG06476.1
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).
 
 0.999
EJG07845.1
Formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; TIGRFAM: formate dehydrogenase, alpha subunit, archaeal-type; COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterPro IPR006478:IPR006963:IPR006656:IPR006657; KEGG: mem:Memar_1381 formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; SPTR: Formate dehydrogenase, alpha subunit (F420); TIGRFAM: Formate dehydrogenase, alp [...]
 
 0.999
EJG06477.1
PFAM: Cysteine-rich domain; TIGRFAM: CoB--CoM heterodisulfide reductase, subunit B; COGs: COG2048 Heterodisulfide reductase subunit B; InterPro IPR017678:IPR004017; KEGG: mhu:Mhun_1837 protein of unknown function DUF224, cysteine-rich region; PFAM: Cysteine-rich region, CCG; SPTR: CoB--CoM heterodisulfide reductase subunit B; TIGRFAM: CoB--CoM heterodisulphide reductase, subunit B.
 
 0.998
EJG06478.1
TIGRFAM: CoB--CoM heterodisulfide reductase, subunit C; COGs: COG1150 Heterodisulfide reductase subunit C; InterPro IPR017680; KEGG: mhu:Mhun_1836 4Fe-4S ferredoxin, iron-sulfur binding; SPTR: CoB--CoM heterodisulfide reductase subunit C; TIGRFAM: CoB--CoM heterodisulphide reductase, subunit C.
 
 0.998
EJG06480.1
PFAM: 4Fe-4S binding domain; InterPro IPR001450; KEGG: mla:Mlab_0237 hypothetical protein; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
 
  0.997
EJG06675.1
Fumarate reductase/succinate dehydrogenase flavoprotein domain protein; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).
 
 0.992
EJG06472.1
PFAM: Amidohydrolase family; TIGRFAM: formylmethanofuran dehydrogenase subunit A; COGs: COG1229 Formylmethanofuran dehydrogenase subunit A; InterPro IPR012027:IPR013108; KEGG: mem:Memar_0619 amidohydrolase 3; PFAM: Amidohydrolase 3; SPTR: Formylmethanofuran dehydrogenase, subunit A; TIGRFAM: Formylmethanofuran dehydrogenase, subunit A.
  
 0.988
mtrA
Tetrahydromethanopterin S-methyltransferase subunit G; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step; Belongs to the MtrA family.
  
  
 0.983
EJG06474.1
Molybdopterin dinucleotide-binding region; PFAM: Molydopterin dinucleotide binding domain; COGs: COG1153 Formylmethanofuran dehydrogenase subunit D; InterPro IPR006657; KEGG: mem:Memar_0621 molydopterin dinucleotide-binding region; PFAM: Molydopterin dinucleotide-binding region; SPTR: Formylmethanofuran dehydrogenase, subunit D; manually curated.
  
 
 0.983
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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