STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07891.1PFAM: PAC2 family; TIGRFAM: TIGR00162 family protein; COGs: COG2047 conserved hypothetical protein (ATP-grasp superfamily); InterPro IPR004426:IPR002766; KEGG: mpi:Mpet_1769 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00062. (247 aa)    
Predicted Functional Partners:
rpl44e
Ribosomal protein L44E; Binds to the 23S rRNA.
 
     0.883
EJG07892.1
PHP domain protein; TIGRFAM: TIGR00375 family protein; COGs: COG1379 conserved hypothetical protein; InterPro IPR004013; KEGG: mbn:Mboo_1948 phosphotransferase domain-containing protein; PFAM: PHP, C-terminal; SPTR: PHP C-terminal domain protein.
       0.860
priS
DNA primase small subunit; Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. [...]
 
     0.784
EJG07889.1
PFAM: Eukaryotic translation initiation factor 2 alpha subunit; S1 RNA binding domain; COGs: COG1093 Translation initiation factor 2 alpha subunit (eIF-2alpha); InterPro IPR003029:IPR011488; KEGG: mem:Memar_2051 translation initiation factor IF-2 subunit alpha; PFAM: Eukaryotic translation initiation factor 2, alpha subunit; Ribosomal protein S1, RNA binding domain; SPTR: Translation initiation factor 2 subunit alpha (AeIF-2a).
 
    0.783
rps27e
PFAM: Ribosomal protein S27; COGs: COG2051 Ribosomal protein S27E; HAMAP: 30S ribosomal protein S27e; InterPro IPR000592; KEGG: mpl:Mpal_0956 30S ribosomal protein S27e; PFAM: Ribosomal protein S27e; SPTR: 30S ribosomal protein S27e.
 
     0.763
polC
DNA polymerase II large subunit; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase.
  
     0.706
rpl31e
PFAM: Ribosomal protein L31e; COGs: COG2097 Ribosomal protein L31E; HAMAP: 50S ribosomal protein L31e; InterPro IPR000054; KEGG: mem:Memar_1969 50S ribosomal protein L31e; PFAM: Ribosomal protein L31e; SPTR: 50S ribosomal protein L31e; Belongs to the ribosomal protein L31e family.
  
     0.686
spt5
NusG antitermination factor; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.
  
     0.668
EJG06683.1
PFAM: PUA domain; TIGRFAM: uncharacterized domain 2; COGs: COG1370 Prefoldin molecular chaperone implicated in de novo protein folding alpha subunit; InterPro IPR002478:IPR004521; KEGG: mbn:Mboo_1829 PUA domain-containing protein; PFAM: Pseudouridine synthase/archaeosine transglycosylase; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR: PUA domain containing protein.
  
     0.663
EJG06873.1
Conserved hypothetical protein CHP01210; TIGRFAM: TIGR01210 family protein; COGs: COG1244 Fe-S oxidoreductase; InterPro IPR006638:IPR007197:IPR005909; KEGG: mpl:Mpal_2148 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; TIGRFAM: Conserved hypothetical protein CHP01210.
  
     0.649
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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