STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07910.1PFAM: Protein of unknown function DUF89; COGs: COG1578 conserved hypothetical protein; InterPro IPR002791; KEGG: mem:Memar_0291 hypothetical protein; PFAM: Domain of unknown function DUF89; SPTR: Putative uncharacterized protein. (285 aa)    
Predicted Functional Partners:
EJG06138.1
PFAM: D12 class N6 adenine-specific DNA methyltransferase; TIGRFAM: DNA adenine methylase (dam); COGs: COG0338 Site-specific DNA methylase; InterPro IPR012327:IPR012326; KEGG: mpi:Mpet_0189 DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; SPTR: DNA adenine methylase; TIGRFAM: DNA adenine methylase.
     
 0.493
gatB
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
 
     0.465
EJG06622.1
Beta-lactamase domain-containing protein; PFAM: Metallo-beta-lactamase superfamily; COGs: COG1237 Metal-dependent hydrolase of the beta-lactamase superfamily II; KEGG: mem:Memar_1774 beta-lactamase domain-containing protein; SPTR: Beta-lactamase domain protein.
 
     0.460
EJG08271.1
Peptidase U32; PFAM: Collagenase; Peptidase family U32; COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: mem:Memar_1293 peptidase U32; PFAM: Peptidase U32; SPTR: Peptidase U32.
 
     0.447
EJG07223.1
PFAM: Protein of unknown function DUF134; COGs: COG1342 DNA-binding protein; HAMAP: UPF0251 protein; InterPro IPR002852; KEGG: mpl:Mpal_2345 protein of unknown function DUF134; PFAM: Uncharacterised protein family UPF0251; SPTR: UPF0251 protein Mpal_2345; Belongs to the UPF0251 family.
 
     0.445
EJG07911.1
KEGG: mem:Memar_0292 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.443
EJG07912.1
Cell division ATPase MinD; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: cell division ATPase MinD, archaeal; COGs: COG0455 ATPase involved in chromosome partitioning; InterPro IPR010224:IPR002586; KEGG: mbn:Mboo_1911 cell division ATPase MinD; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Cell division ATPase MinD; TIGRFAM: ATPase, cell division-type, MinD.
       0.439
purE
1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.407
nadK
Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
       0.407
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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