STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07915.1Roadblock/LC7 family protein; PFAM: Roadblock/LC7 domain; InterPro IPR004942; KEGG: mpl:Mpal_2155 roadblock/LC7 family protein; PFAM: Dynein light chain-related; SPTR: Roadblock/LC7 family protein. (124 aa)    
Predicted Functional Partners:
EJG06615.1
Small GTP-binding protein; PFAM: Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; COGs: COG2229 GTPase; InterPro IPR013684:IPR005225; KEGG: mbn:Mboo_2067 small GTP-binding protein; PFAM: MIRO-like; SPTR: Small GTP-binding protein; TIGRFAM: Small GTP-binding protein.
  
 
 0.939
EJG07522.1
Small GTP-binding protein; PFAM: Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; COGs: COG2229 GTPase; InterPro IPR005225:IPR002917; KEGG: mem:Memar_2190 small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; SPTR: Small GTP-binding protein; TIGRFAM: Small GTP-binding protein.
  
 
 0.935
EJG07916.1
PFAM: Response regulator receiver domain; COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR001789; KEGG: mbn:Mboo_1937 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein.
       0.827
mutL
DNA mismatch repair protein mutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
      
 0.665
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.