STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07939.12'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. (182 aa)    
Predicted Functional Partners:
cca
CCA-adding enzyme; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.
 
     0.953
rtcB
Protein of unknown function UPF0027; PFAM: Uncharacterized protein family UPF0027; COGs: COG1690 conserved hypothetical protein; InterPro IPR001233; KEGG: mpi:Mpet_1701 hypothetical protein; PFAM: Uncharacterised protein family UPF0027; SPTR: Putative uncharacterized protein; Belongs to the RtcB family.
 
   
 0.643
EJG07941.1
KEGG: pat:Patl_1101 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.585
EJG07529.1
Forkhead-associated protein; PFAM: FHA domain; InterPro IPR000253; KEGG: mem:Memar_1770 FHA domain-containing protein; PFAM: Forkhead-associated; SMART: Forkhead-associated; SPTR: Transcriptional regulator, ArsR family.
       0.577
EJG08051.1
PFAM: Bacterial regulatory protein, arsR family; FHA domain; InterPro IPR001845:IPR000253; KEGG: mem:Memar_1770 FHA domain-containing protein; PFAM: Forkhead-associated; HTH transcriptional regulator, ArsR; SMART: Forkhead-associated; HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family.
       0.577
EJG07937.1
TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; InterPro IPR012833; KEGG: mem:Memar_0320 anaerobic ribonucleoside-triphosphate reductase; SPTR: Anaerobic ribonucleoside-triphosphate reductase; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic.
       0.559
EJG06516.1
PFAM: tRNA synthetases class I (W and Y); COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR002305; KEGG: mem:Memar_0642 tryptophan--tRNA ligase; PFAM: Aminoacyl-tRNA synthetase, class Ib; SPTR: Tryptophanyl-tRNA synthetase.
     
 0.541
EJG07938.1
Glutaredoxin; KEGG: mbn:Mboo_1708 glutaredoxin; SPTR: Glutaredoxin.
       0.532
EJG07936.1
PFAM: Putative pyruvate format-lyase activating enzyme (DUF1786); COGs: COG4012 conserved hypothetical protein; InterPro IPR014846; KEGG: mem:Memar_0319 pyruvate formate-lyase activating enzyme; PFAM: Protein of unknown function DUF1786, putative pyruvate format-lyase activating enzyme; SPTR: Pyruvate formate-lyase activating enzyme.
       0.514
EJG06109.1
Protein of unknown function DUF343; PFAM: Trm112p-like protein; InterPro IPR005651; KEGG: mem:Memar_0006 hypothetical protein; PFAM: Protein of unknown function DUF343; SPTR: Putative uncharacterized protein.
 
     0.493
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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