STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07956.1COGs: COG2865 transcriptional regulator protein; KEGG: cli:Clim_1467 putative transcriptional regulator; SPTR: Putative transcriptional regulator. (490 aa)    
Predicted Functional Partners:
EJG07974.1
PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001:IPR007409:IPR006935; KEGG: dze:Dd1591_4250 hypothetical protein; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: Putative uncharacterized protein.
  
  
 0.715
EJG07975.1
PFAM: Type I restriction modification DNA specificity domain; COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: kpn:KPN_pKPN4p07085 putative restriction endonuclease S subunit; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Putative restriction endonuclease S subunit.
  
    0.696
EJG06703.1
Hypothetical protein; COGs: COG1373 ATPase (AAA+ superfamily); KEGG: mhu:Mhun_2215 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.505
EJG06351.1
Hypothetical protein; PFAM: Archaeal ATPase; COGs: COG1373 ATPase (AAA+ superfamily); KEGG: mma:MM_0019 hypothetical protein; SPTR: Conserved protein.
 
     0.496
EJG06748.1
COGs: COG1373 ATPase (AAA+ superfamily); KEGG: mem:Memar_1495 AAA family ATPase; SPTR: ATPase (AAA+ superfamily)-like protein.
 
     0.462
EJG07259.1
ATPase; PFAM: Archaeal ATPase; Archaea bacterial proteins of unknown function; COGs: COG1672 ATPase (AAA+ superfamily); InterPro IPR011579:IPR004256; KEGG: mem:Memar_0874 ATPase; SPTR: ATPase.
  
     0.438
EJG06738.1
ATPase; PFAM: Bacterial regulatory protein, arsR family; Archaeal ATPase; Archaea bacterial proteins of unknown function; COGs: COG1672 ATPase (AAA+ superfamily); InterPro IPR011579:IPR004256; KEGG: mhu:Mhun_1537 ATPase; SPTR: ATPase.
  
     0.435
EJG05987.1
SMC domain protein; COGs: COG4637 ATPase; InterPro IPR003395; KEGG: tna:CTN_0047 ATPase-like protein; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: ATPase-like protein.
 
     0.429
EJG07957.1
Hypothetical protein.
       0.425
EJG06773.1
ATPase; PFAM: Archaeal ATPase; Archaea bacterial proteins of unknown function; COGs: COG1672 ATPase (AAA+ superfamily); InterPro IPR011579:IPR004256; KEGG: mhu:Mhun_0415 ATPase; SPTR: ATPase.
  
     0.420
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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