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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07958.1PFAM: Domain of unknown function DUF87; COGs: COG0433 ATPase; InterPro IPR003593:IPR002789; KEGG: bph:Bphy_0246 hypothetical protein; PFAM: Protein of unknown function DUF87; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein. (350 aa)    
Predicted Functional Partners:
EJG06761.1
NurA domain-containing protein; PFAM: NurA domain; InterPro IPR018977; KEGG: mem:Memar_1618 hypothetical protein; PFAM: NurA domain; SPTR: Putative uncharacterized protein.
   
 
 0.793
EJG07957.1
Hypothetical protein.
       0.636
leuS
PFAM: tRNA synthetases class I (I, L, M and V); tRNA synthetases class I (M); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, archaeal and cytosolic family; COGs: COG0495 Leucyl-tRNA synthetase; InterPro IPR004493:IPR015413:IPR013155; KEGG: mem:Memar_2008 leucyl-tRNA synthetase; PFAM: Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; Aminoacyl-tRNA synthetase, class I (M); SPTR: Leucyl-tRNA synthetase; TIGRFAM: Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic.
   
   0.416
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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