STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07960.1Hypothetical protein; KEGG: mhu:Mhun_2442 PKD; SPTR: PKD. (609 aa)    
Predicted Functional Partners:
EJG07501.1
PFAM: YycH protein; KEGG: mbn:Mboo_1423 PKD domain-containing protein; SPTR: PKD domain containing protein; manually curated.
    
  0.817
EJG07959.1
PFAM: PKD domain; COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: mhu:Mhun_2840 PKD; PFAM: PKD; SMART: PKD; SPTR: PKD.
    
  0.783
EJG07961.1
KEGG: mem:Memar_0550 hypothetical protein; SPTR: Putative uncharacterized protein.
      
0.762
EJG07447.1
APHP domain protein; PFAM: Protein of unknown function (DUF3344); CARDB; InterPro IPR011635; KEGG: mac:MA1766 cell surface protein; PFAM: APHP; SPTR: Cell surface protein.
    
  0.544
EJG07451.1
Cell surface glycoprotein; PFAM: Protein of unknown function (DUF3344); KEGG: mpi:Mpet_0021 cell surface glycoprotein; SPTR: Cell surface glycoprotein.
    
  0.544
EJG07126.1
PFAM: PKD domain; COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: mac:MA1764 cell surface protein; PFAM: PKD; SMART: PKD; SPTR: Cell surface protein.
 
   
  0.509
EJG07962.1
Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication.
       0.461
EJG07963.1
Hypothetical protein.
       0.461
EJG07856.1
Exosortase EpsH-related protein; PFAM: Transmembrane exosortase (Exosortase_EpsH); COGs: COG4083 membrane protein; InterPro IPR019127; KEGG: mbn:Mboo_0910 cytochrome oxidase, subunit I, putative; PFAM: Exosortase EpsH-related; SPTR: Cytochrome oxidase, subunit I, putative.
  
    0.449
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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