STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG07978.1COGs: COG3586 conserved hypothetical protein; KEGG: tgr:Tgr7_0601 hypothetical protein; SPTR: Putative uncharacterized protein. (304 aa)    
Predicted Functional Partners:
EJG07977.1
Uncharacterized protein family UPF0310; PFAM: Protein of unknown function DUF55; COGs: COG1673 conserved hypothetical protein; InterPro IPR002740; KEGG: mem:Memar_1478 hypothetical protein; PFAM: Uncharacterised protein family UPF0310; SPTR: Putative uncharacterized protein.
       0.773
EJG07979.1
PFAM: Transcription factor TFIID (or TATA-binding protein, TBP); COGs: COG2101 TATA-box binding protein (TBP) component of TFIID and TFIIIB; InterPro IPR000814; KEGG: tba:TERMP_01858 TatA-box binding protein; PFAM: TATA-box binding; SPTR: Transcription factor TFIID (Or TATA-binding protein, TBP).
       0.580
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.