STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG08002.1PFAM: Bacterial type II secretion system protein F domain; COGs: COG1955 flagella assembly protein J; InterPro IPR018076; KEGG: mbn:Mboo_2354 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Type II secretion system protein. (647 aa)    
Predicted Functional Partners:
EJG08001.1
PFAM: Type II/IV secretion system protein; COGs: COG0630 Type IV secretory pathway VirB11 protein involved in flagella biosynthesis; InterPro IPR001482; KEGG: mpl:Mpal_2687 type II secretion system protein E; PFAM: Type II secretion system protein E; SPTR: Type II secretion system protein E.
 
  
 0.959
EJG08000.1
HTR-like protein; PFAM: KaiC; KEGG: mpl:Mpal_2688 HTR-like protein; SPTR: HTR-like protein.
 
     0.845
EJG07725.1
PFAM: Type II/IV secretion system protein; COGs: COG0630 Type IV secretory pathway VirB11 protein involved in flagella biosynthesis; InterPro IPR001482; KEGG: mbn:Mboo_1906 type II secretion system protein E; PFAM: Type II secretion system protein E; SPTR: Type II secretion system protein E.
 
  
 0.798
EJG07607.1
Flagellin domain protein; PFAM: Protein of unknown function (DUF1628); TIGRFAM: archaeal flagellin N-terminal-like domain; InterPro IPR013373:IPR012859; KEGG: mem:Memar_1218 hypothetical protein; PFAM: Protein of unknown function DUF1628; SPTR: Putative uncharacterized protein; TIGRFAM: Archaeal flagellin, N-terminal related.
  
     0.732
EJG07999.1
Putative circadian clock protein, KaiC; PFAM: KaiC; TIGRFAM: KaiC domain protein, AF_0351 family; COGs: COG0467 RecA-superfamily ATPase implicated in signal transduction; InterPro IPR014774:IPR015140; KEGG: mpi:Mpet_0217 putative circadian clock protein KaiC; PFAM: Circadian clock protein KaiC, central region; KaiA binding; SPTR: Putative circadian clock protein, KaiC; TIGRFAM: KaiC domain protein, AF_0351 family.
 
     0.728
EJG07195.1
PFAM: Type II/IV secretion system protein; COGs: COG0630 Type IV secretory pathway VirB11 protein involved in flagella biosynthesis; InterPro IPR001482; KEGG: mem:Memar_0949 type II secretion system protein E; PFAM: Type II secretion system protein E; SPTR: Type II secretion system protein E.
 
  
 0.724
EJG07856.1
Exosortase EpsH-related protein; PFAM: Transmembrane exosortase (Exosortase_EpsH); COGs: COG4083 membrane protein; InterPro IPR019127; KEGG: mbn:Mboo_0910 cytochrome oxidase, subunit I, putative; PFAM: Exosortase EpsH-related; SPTR: Cytochrome oxidase, subunit I, putative.
  
     0.677
EJG08077.1
PFAM: PRC-barrel domain; COGs: COG1873 conserved hypothetical protein; InterPro IPR007903; KEGG: mem:Memar_0401 PRC-barrel domain-containing protein; PFAM: PRC-barrel; SPTR: PRC-barrel domain protein.
  
    0.669
EJG06094.1
TIGRFAM: signal peptidase I, archaeal type; InterPro IPR001733; KEGG: mem:Memar_0046 peptidase S26B, signal peptidase; SPTR: Peptidase S26B, signal peptidase; TIGRFAM: Peptidase S26B, eukaryotic signal peptidase.
  
     0.656
atpF
V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.636
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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