STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG08003.1KEGG: mla:Mlab_0285 hypothetical protein; SPTR: Putative uncharacterized protein. (53 aa)    
Predicted Functional Partners:
EJG08004.1
KEGG: mem:Memar_0280 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.860
EJG08005.1
TIGRFAM: ATP synthase archaeal, H subunit; KEGG: mpl:Mpal_2683 V-type H+-transporting ATPase subunit E; SPTR: V-type H+-transporting ATPase subunit E.
       0.599
EJG08006.1
PFAM: V-type ATPase 116kDa subunit family; COGs: COG1269 H+-ATPase subunit I; InterPro IPR002490; KEGG: mem:Memar_0282 V-type ATP synthase subunit I; PFAM: ATPase, V0/A0 complex, 116kDa subunit; SPTR: V-type ATPase, 116 kDa subunit; Belongs to the V-ATPase 116 kDa subunit family.
       0.598
EJG08007.1
PFAM: ATP synthase subunit C; InterPro IPR002379; KEGG: mpl:Mpal_2681 H+transporting two-sector ATPase C subunit; PFAM: ATPase, F0/V0 complex, subunit C; SPTR: H+transporting two-sector ATPase C subunit.
       0.598
atpE-2
V-type proton ATPase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.572
atpC
V-type ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.553
atpF
V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.553
EJG08001.1
PFAM: Type II/IV secretion system protein; COGs: COG0630 Type IV secretory pathway VirB11 protein involved in flagella biosynthesis; InterPro IPR001482; KEGG: mpl:Mpal_2687 type II secretion system protein E; PFAM: Type II secretion system protein E; SPTR: Type II secretion system protein E.
       0.550
EJG08002.1
PFAM: Bacterial type II secretion system protein F domain; COGs: COG1955 flagella assembly protein J; InterPro IPR018076; KEGG: mbn:Mboo_2354 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Type II secretion system protein.
       0.550
atpA-2
V-type ATP synthase alpha chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
       0.482
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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