STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG08023.1PFAM: Sugar-specific transcriptional regulator TrmB; COGs: COG1378 transcriptional regulator protein; InterPro IPR002831; KEGG: mpl:Mpal_1202 transcriptional regulator, TrmB; PFAM: Transcriptional regulator TrmB; SPTR: Transcriptional regulator, TrmB. (257 aa)    
Predicted Functional Partners:
EJG06015.1
Sulfopyruvate decarboxylase, alpha subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: sulfopyruvate decarboxylase, beta subunit; sulfopyruvate decarboxylase, alpha subunit; COGs: COG4032 thiamine-pyrophosphate-binding protein; InterPro IPR011766; KEGG: mem:Memar_0112 thiamine pyrophosphate binding domain-containing protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; SPTR: Sulfopyruvate decarboxylase subunit beta / sulfopyruvate decarboxylase subunit alpha; TIGRFAM: sulfopy [...]
   
    0.814
EJG08024.1
S-layer-like domain-containing protein; PFAM: NPCBM-associated, NEW3 domain of alpha-galactosidase; COGs: COG1361 S-layer domain; KEGG: mem:Memar_0486 S-layer-like domain-containing protein; SPTR: S-layer domain-like protein.
       0.572
EJG08025.1
PFAM: Glucose-6-phosphate isomerase (GPI); COGs: COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzyme; InterPro IPR010551; KEGG: mem:Memar_0485 glucose-6-phosphate isomerase; PFAM: Glucose-6-phosphate isomerase, prokarya; SPTR: Glucose-6-phosphate isomerase.
       0.556
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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