STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG08034.1Parallel beta-helix repeat protein; PFAM: Periplasmic copper-binding protein (NosD); Papain family cysteine protease; TIGRFAM: parallel beta-helix repeat (two copies); COGs: COG4870 Cysteine protease; InterPro IPR000668:IPR006633:IPR006626:IPR007742; KEGG: mac:MA2507 cell surface protein; PFAM: Peptidase C1A, papain C-terminal; Periplasmic copper-binding; SMART: Peptidase C1A, papain C-terminal; Carbohydrate-binding/sugar hydrolysis domain; Parallel beta-helix repeat; SPTR: Cell surface protein; TIGRFAM: parallel beta-helix repeat. (1257 aa)    
Predicted Functional Partners:
EJG06649.1
PFAM: Serpin (serine protease inhibitor); COGs: COG4826 Serine protease inhibitor; InterPro IPR000215; KEGG: mem:Memar_0460 proteinase inhibitor I4, serpin; PFAM: Protease inhibitor I4, serpin; SMART: Protease inhibitor I4, serpin; SPTR: Proteinase inhibitor I4, serpin; Belongs to the serpin family.
  
 0.969
EJG07306.1
PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: mma:MM_2829 peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: Peptidyl-prolyl cis-trans isomerase.
  
 
 0.812
rps11
Ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
   
 0.733
EJG06661.1
Small GTP-binding protein; PFAM: GTPase of unknown function; TGS domain; TIGRFAM: small GTP-binding protein domain; COGs: COG1163 GTPase; InterPro IPR002917:IPR004095:IPR005225; KEGG: mem:Memar_1699 small GTP-binding protein; PFAM: TGS; GTP-binding protein, HSR1-related; SPTR: Small GTP-binding protein; TIGRFAM: Small GTP-binding protein.
    
   0.733
EJG06915.1
YbhB YbcL family protein; PFAM: Phosphatidylethanolamine-binding protein; TIGRFAM: Raf kinase inhibitor-like protein, YbhB/YbcL family; COGs: COG1881 Phospholipid-binding protein; InterPro IPR008914:IPR005247; KEGG: mbn:Mboo_1514 PEBP family protein; PFAM: Phosphatidylethanolamine-binding protein PEBP; SPTR: PEBP family protein; TIGRFAM: YbhB/YbcL.
   
 
 0.691
EJG07399.1
YbhB YbcL family protein; PFAM: Phosphatidylethanolamine-binding protein; TIGRFAM: Raf kinase inhibitor-like protein, YbhB/YbcL family; COGs: COG1881 Phospholipid-binding protein; InterPro IPR005247:IPR008914; KEGG: mpl:Mpal_1321 PEBP family protein; PFAM: Phosphatidylethanolamine-binding protein PEBP; SPTR: PEBP family protein; TIGRFAM: YbhB/YbcL.
   
 
 0.691
EJG08103.1
YbhB YbcL family protein; PFAM: Phosphatidylethanolamine-binding protein; TIGRFAM: Raf kinase inhibitor-like protein, YbhB/YbcL family; COGs: COG1881 Phospholipid-binding protein; InterPro IPR008914:IPR005247; KEGG: mhu:Mhun_0135 YbhB and YbcL; PFAM: Phosphatidylethanolamine-binding protein PEBP; SPTR: Phospholipid-binding protein, PBP family; TIGRFAM: YbhB/YbcL.
   
 
 0.691
EJG08214.1
PFAM: Chagasin family peptidase inhibitor I42; Domain of unknown function (DUF333); COGs: COG5513 secreted protein; InterPro IPR005590:IPR018990; KEGG: mhu:Mhun_0066 hypothetical protein; PFAM: Proteinase inhibitor I42, chagasin; Protein of unknown function DUF333; SPTR: Putative uncharacterized protein.
 
  
 0.684
EJG08033.1
PFAM: Protein of unknown function DUF124; TIGRFAM: TIGR00266 family protein; COGs: COG2013 conserved hypothetical protein; InterPro IPR002838; KEGG: mem:Memar_1861 hypothetical protein; PFAM: Protein of unknown function DUF124; SPTR: Putative uncharacterized protein; TIGRFAM: Protein of unknown function DUF124.
       0.543
EJG08231.1
Peptidase S8 and S53 subtilisin kexin sedolisin; PFAM: Cohesin domain; CARDB; Subtilase family; COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209:IPR002102; KEGG: afu:AF1653 alkaline serine protease (AprM); PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Cellulosome anchoring protein, cohesin region; SPTR: Alkaline serine protease (AprM); Belongs to the peptidase S8 family.
   
 
 0.494
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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