STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG08043.1Protein of unknown function DUF2240; PFAM: Uncharacterized protein conserved in archaea (DUF2240); COGs: COG3612 conserved hypothetical protein; InterPro IPR018716; KEGG: mem:Memar_0465 hypothetical protein; PFAM: Protein of unknown function DUF2240; SPTR: Putative uncharacterized protein. (153 aa)    
Predicted Functional Partners:
EJG08042.1
KEGG: mem:Memar_0466 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.938
EJG06998.1
COGs: COG3390 conserved hypothetical protein; KEGG: mem:Memar_1249 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.716
atpF
V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.701
EJG08298.1
COGs: COG3390 conserved hypothetical protein; KEGG: mpl:Mpal_0023 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.694
EJG07738.1
Hypothetical protein; COGs: COG1326 Uncharacterized Zn-finger protein; KEGG: mem:Memar_1983 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.687
EJG08077.1
PFAM: PRC-barrel domain; COGs: COG1873 conserved hypothetical protein; InterPro IPR007903; KEGG: mem:Memar_0401 PRC-barrel domain-containing protein; PFAM: PRC-barrel; SPTR: PRC-barrel domain protein.
  
     0.678
atpE-2
V-type proton ATPase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.668
EJG06867.1
Putative phosphoserine phosphatase; COGs: COG1340 Uncharacterized coiled-coil protein; KEGG: mbn:Mboo_1403 putative phosphoserine phosphatase; SPTR: Putative phosphoserine phosphatase.
  
     0.666
EJG07173.1
PFAM: PUA domain; TIGRFAM: uncharacterized domain 2; COGs: COG1549 Queuine tRNA-ribosyltransferase contain PUA domain; InterPro IPR002478:IPR004521; KEGG: mem:Memar_1286 PUA domain-containing protein; PFAM: Pseudouridine synthase/archaeosine transglycosylase; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR: tRNA-archaeosine synthase.
  
     0.661
EJG06094.1
TIGRFAM: signal peptidase I, archaeal type; InterPro IPR001733; KEGG: mem:Memar_0046 peptidase S26B, signal peptidase; SPTR: Peptidase S26B, signal peptidase; TIGRFAM: Peptidase S26B, eukaryotic signal peptidase.
  
     0.656
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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