STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG08068.1PFAM: Radical SAM superfamily; B12 binding domain; TIGRFAM: B12-binding domain/radical SAM domain protein, MJ_0865 family; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR006158:IPR007197; KEGG: mem:Memar_0391 radical SAM domain-containing protein; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein. (445 aa)    
Predicted Functional Partners:
EJG06510.1
PFAM: Bacterial regulatory protein, arsR family; V4R domain; COGs: COG1719 hydrocarbon binding protein (contains V4R domain); InterPro IPR001845:IPR004096; KEGG: mem:Memar_0431 4-vinyl reductase, 4VR; PFAM: 4-vinyl reductase, 4VR; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family.
  
 
 0.941
EJG07008.1
PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate:AMP phosphotransferase; COGs: COG2326 conserved hypothetical protein; InterPro IPR005660; KEGG: mmh:Mmah_0747 polyphosphate:AMP phosphotransferase; PFAM: Polyphosphate kinase 2; SPTR: Polyphosphate:AMP phosphotransferase; TIGRFAM: polyphosphate:AMP phosphotransferase.
   
    0.634
EJG08069.1
PFAM: PEGA domain; InterPro IPR013229; KEGG: mem:Memar_1516 PEGA domain-containing protein; PFAM: PEGA; SPTR: PEGA domain protein.
       0.634
EJG06671.1
Digeranylgeranylglyceryl phosphate synthase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
 
 
 0.523
EJG06999.1
PFAM: UbiA prenyltransferase family; COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: mpl:Mpal_1338 prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: UbiA prenyltransferase.
 
 
 0.522
EJG06545.1
PFAM: Uncharacterized protein conserved in archaea (DUF2117); COGs: COG4069 conserved hypothetical protein; InterPro IPR012032; KEGG: mem:Memar_1862 hypothetical protein; PFAM: Uncharacterised conserved protein UCP006598; SPTR: Putative uncharacterized protein.
 
     0.472
EJG07582.1
Methanogenesis marker protein 10; PFAM: Radical SAM superfamily; Protein of unknown function (DUF512); TIGRFAM: putative methanogenesis marker protein 10; COGs: COG1625 Fe-S oxidoreductase related to NifB/MoaA family; InterPro IPR017672:IPR007197:IPR007549; KEGG: mem:Memar_1632 hypothetical protein; PFAM: Protein of unknown function DUF512; Radical SAM; SPTR: Putative uncharacterized protein; TIGRFAM: Putative methanogenesis marker protein 10.
 
     0.464
EJG06291.1
PFAM: Acetyltransferase (GNAT) family; TIGRFAM: ribosomal-protein-alanine acetyltransferase; COGs: COG0456 Acetyltransferase; InterPro IPR006464:IPR000182; KEGG: mbn:Mboo_0136 ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Ribosomal-protein-alanine acetyltransferase; TIGRFAM: Ribosomal-protein-alanine acetyltransferase.
  
    0.447
EJG06642.1
PFAM: UbiA prenyltransferase family; InterPro IPR000537; KEGG: mem:Memar_1715 prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: UbiA prenyltransferase.
  
 
 0.438
EJG07536.1
PFAM: Cytidylyltransferase family; COGs: COG0170 Dolichol kinase; InterPro IPR000374; KEGG: mhu:Mhun_1815 phosphatidate cytidylyltransferase; PFAM: Phosphatidate cytidylyltransferase; SPTR: CTP:2, 3-di-O-geranylgeranyl-sn-glycero-1-phosphate cytidyltransferase.
  
     0.435
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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