STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG08075.1PFAM: Radical SAM superfamily; COGs: COG1031 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: mbn:Mboo_2273 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein. (548 aa)    
Predicted Functional Partners:
mptE
Protein of unknown function DUF115; Catalyzes the transfer of diphosphate from ATP to 6- hydroxymethyl-7,8-dihydropterin (6-HMD), leading to 6-hydroxymethyl- 7,8-dihydropterin diphosphate (6-HMDP); Belongs to the archaeal 6-HMPDK family.
 
     0.957
EJG08073.1
PFAM: DHH family; DHHA1 domain; TrkA-N domain; COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR003148:IPR001667:IPR003156; KEGG: mem:Memar_0397 TrkA domain-containing protein; PFAM: Regulator of K+ conductance, N-terminal; Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR: TrkA-N domain protein.
       0.943
atpE-2
V-type proton ATPase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.514
EJG06608.1
PFAM: Radical SAM superfamily; COGs: COG2108 conserved hypothetical protein related to pyruvate formate-lyase activation; InterPro IPR007197; KEGG: mem:Memar_1789 radical SAM domain-containing protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein.
  
     0.502
EJG07738.1
Hypothetical protein; COGs: COG1326 Uncharacterized Zn-finger protein; KEGG: mem:Memar_1983 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.492
EJG08043.1
Protein of unknown function DUF2240; PFAM: Uncharacterized protein conserved in archaea (DUF2240); COGs: COG3612 conserved hypothetical protein; InterPro IPR018716; KEGG: mem:Memar_0465 hypothetical protein; PFAM: Protein of unknown function DUF2240; SPTR: Putative uncharacterized protein.
  
     0.465
EJG07594.1
PFAM: NMD3 family; COGs: COG1499 NMD protein affecting ribosome stability and mRNA decay; InterPro IPR007064; KEGG: mem:Memar_1238 hypothetical protein; PFAM: NMD3; SPTR: Nmd3.
  
     0.442
EJG07413.1
PFAM: Phosphoadenosine phosphosulfate reductase family; COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR002500; KEGG: mpl:Mpal_1512 aminotransferase class V; PFAM: Phosphoadenosine phosphosulphate reductase; SPTR: Aminotransferase class V.
  
     0.437
trmY
UPF0217 protein; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family.
  
     0.435
atpF
V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.432
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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